Construct: ORF ccsbBroadEn_13164
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004985.1_s300c1, BRDN0000396724
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERICH6 (131831)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 131831 | ERICH6 | glutamate rich 6 | NM_001308234.2 | 100% | 100% | |
| 2 | human | 131831 | ERICH6 | glutamate rich 6 | NM_152394.5 | 77.9% | 77.9% | 1_438del |
| 3 | human | 131831 | ERICH6 | glutamate rich 6 | XM_005247120.3 | 55.2% | 53.8% | 1_438del;1498_1499ins229;1536_1537ins224 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1617
- ORF length:
- 1551
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGAAATGAGT ATAGATAGAA ATATTCATCG CAATTTGTCT CCAGGAATTC 121 CAGTATCAGT ACAAACAGAA GAAAGTTGGC TCCAAGATTT GTCTGATAAA GTGCAATCGA 181 GGAAGAAAGC CTCTAAAGAG AAAGCTGAAC CTGAATGTCT GGCATCTAAG TTAAGAGAAA 241 AATGGGTAAT TAATCCAGAA GAGTCGAAAC TAAATATTTT ATATGAGCTG GAGTTTAAGG 301 AAGACTTCAT AACACTGTTC GAGCCTTCTC TAAGAACGTT ACCCAGCATC GGACCACCAT 361 CCATTCTGGC ATACAAAGAA GAGAGCTCCA ATTTAGGCAT TAACTTCAAG GATGAAGAGG 421 AGGAGACATC ACCCAAATGT GAATTTTGTG GCAGCGATCT AAGAGCATTT TTTTCTAATG 481 TGGATGTTTC CTCTGAACCA AAAGGGCATG CCTCCTGTTG TATTGCTTTC CAAAATCTGA 541 TTGACTATAT CTATGAGGAG CAAATAAAAA CCAAACCCCC TAAAGCTGAA TTAATTGCTA 601 TTGACCCTCA TGCAGCCCAT GGTAGTGAGG TCGACAGACT CAAGGCAAAA GAAAAAGCCC 661 TGCAAAGGAA ACAGGAGCAA CGAATGGCCA GACATTTTGC AATAATATCA AGGGAACAGA 721 CTCATTTCTC TGAAGATGAT TCAAAGCGCT TAAAAACAAT TTCTTATCAA CTTTCTGTGG 781 ATATTCCAGA AAAACAGATA ATTGATGACA TTGTATTTGA TTTTCAACTA AGAAACAGTA 841 ACATGTCTAT CATTTGTTGT GATTCTCGGA TAGCATGTGG AAAGGTTGTC AGGAATGAGC 901 TCTTAGAGAA GCACTACAAA CATGGGAGCA AGTTTCTGAC TTCATTTCCA GATGGGACAA 961 CACAAATATT CTATCCATCT GGAAACCTAG CCATCATTCG AGTGCCCAAC AAGGTAAATG 1021 GTTTTACTTG TATAGTCCAA GAAGATATGC CCACTAACCC TGCTATCCTA GCAGTGCTGG 1081 ATTCCTCTGG CAGAAGTTCC TGCTATCATC CCAATGGAAA TGTCTGGGTA TACATCAATA 1141 TCTTGGGAGG TCAATATTCA GATCAAGCCG GCAACAGAAT AAGGGCTTGG AATTGGTCAA 1201 ATTCCATCAC TTCCTCACCC TTTGTTTCAT TTAAACCTGT CTTTCTGGCT TTGAACCGTT 1261 ATATTGGAGT CCGCATCTTA GAACAAGACA AGATTTCTAT AACTTTTCTA GCAATGGGCC 1321 AACAGGCAAG AATCAGTGTT GGAACCAAAG TGAAGCTACC AAACCCTGAG GAGATTCCAA 1381 TCCTCCGATA CGTAAGTGGA GATGACCTTC TTCTGCTGGC CAGTTTAATA AAGATCCGTC 1441 GCCTGTTTCA TAAACTTGAA GGATGTGTGA ATTTTCCCTC AAGCCAGGTT TGGGAAAAAT 1501 TAAAGCAACC TTCCTACCTT TCTTCACTTT CTCTAAAACT AATTGCCCTT TGTCACAGTT 1561 CTGGTATAAA GCAAGATATA ATGAAGACAA TAAGAAATAT AATAAATGAA GAAATTTACC 1621 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1681 aac