Construct: ORF ccsbBroadEn_13175
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006621.1_s300c1, BRDN0000394753
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL31RA (133396)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001242639.1 | 100% | 100% | |
| 2 | human | 133396 | IL31RA | interleukin 31 receptor A | XM_011543144.2 | 100% | 100% | |
| 3 | human | 133396 | IL31RA | interleukin 31 receptor A | XM_011543145.2 | 95.4% | 95.4% | 0_1ins84 |
| 4 | human | 133396 | IL31RA | interleukin 31 receptor A | XM_011543142.2 | 84.9% | 84.9% | 1_330del |
| 5 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001242636.1 | 83.4% | 83.4% | 1_369del |
| 6 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_139017.6 | 81.4% | 81.4% | 1_426del |
| 7 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001242638.2 | 71.3% | 70.8% | (many diffs) |
| 8 | human | 133396 | IL31RA | interleukin 31 receptor A | XM_011543143.2 | 71.3% | 70.8% | (many diffs) |
| 9 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001242637.2 | 69.5% | 69.1% | (many diffs) |
| 10 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001297572.2 | 65% | 55.3% | (many diffs) |
| 11 | human | 133396 | IL31RA | interleukin 31 receptor A | NM_001297570.2 | 53.1% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1935
- ORF length:
- 1866
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACATACTGG AGATTAGAGA ACATAGCGAA AACTGAACCA CCTAAGATTT 121 TCCGTGTGAA ACCAGTTTTG GGCATCAAAC GAATGATTCA AATTGAATGG ATAAAGCCTG 181 AGTTGGCGCC TGTTTCATCT GATTTAAAAT ACACACTTCG ATTCAGGACA GTCAACAGTA 241 CCAGCTGGAT GGAAGTCAAC TTCGCTAAGA ACCGTAAGGA TAAAAACCAA ACGTACAACC 301 TCACGGGGCT GCAGCCTTTT ACAGAATATG TCATAGCTCT GCGATGTGCG GTCAAGGAGT 361 CAAAGTTCTG GAGTGACTGG AGCCAAGAAA AAATGGGAAT GACTGAGGAA GAAGCTCCAT 421 GTGGCCTGGA ACTGTGGAGA GTCCTGAAAC CAGCTGAGGC GGATGGAAGA AGGCCAGTGC 481 GGTTGTTATG GAAGAAGGCA AGAGGAGCCC CAGTCCTAGA GAAAACACTT GGCTACAACA 541 TATGGTACTA TCCAGAAAGC AACACTAACC TCACAGAAAC AATGAACACT ACTAACCAGC 601 AGCTTGAACT GCATCTGGGA GGCGAGAGCT TTTGGGTGTC TATGATTTCT TATAATTCTC 661 TTGGGAAGTC TCCAGTGGCC ACCCTGAGGA TTCCAGCTAT TCAAGAAAAA TCATTTCAGT 721 GCATTGAGGT CATGCAGGCC TGCGTTGCTG AGGACCAGCT AGTGGTGAAG TGGCAAAGCT 781 CTGCTCTAGA CGTGAACACT TGGATGATTG AATGGTTTCC GGATGTGGAC TCAGAGCCCA 841 CCACCCTTTC CTGGGAATCT GTGTCTCAGG CCACGAACTG GACGATCCAG CAAGATAAAT 901 TAAAACCTTT CTGGTGCTAT AACATCTCTG TGTATCCAAT GTTGCATGAC AAAGTTGGCG 961 AGCCATATTC CATCCAGGCT TATGCCAAAG AAGGCGTTCC ATCAGAAGGT CCTGAGACCA 1021 AGGTGGAGAA CATTGGCGTG AAGACGGTCA CGATCACATG GAAAGAGATT CCCAAGAGTG 1081 AGAGAAAGGG TATCATCTGC AACTACACCA TCTTTTACCA AGCTGAAGGT GGAAAAGGAT 1141 TCTCCAAGAC AGTCAATTCC AGCATCTTGC AGTACGGCCT GGAGTCCCTG AAACGAAAGA 1201 CCTCTTACAT TGTTCAGGTC ATGGCCAGCA CCAGTGCTGG GGGAACCAAC GGGACCAGCA 1261 TAAATTTCAA GACATTGTCA TTCAGTGTCT TTGAGATTAT CCTCATAACT TCTCTGATTG 1321 GTGGAGGCCT TCTTATTCTC ATTATCCTGA CAGTGGCATA TGGTCTCAAA AAACCCAACA 1381 AATTGACTCA TCTGTGTTGG CCCACCGTTC CCAACCCTGC TGAAAGTAGT ATAGCCACAT 1441 GGCATGGAGA TGATTTCAAG GATAAGCTAA ACCTGAAGGA GTCTGATGAC TCTGTGAACA 1501 CAGAAGACAG GATCTTAAAA CCATGTTCCA CCCCCAGTGA CAAGTTGGTG ATTGACAAGT 1561 TGGTGGTGAA CTTTGGGAAT GTTCTGCAAG AAATTTTCAC AGATGAAGCC AGAACGGGTC 1621 AGGAAAACAA TTTAGGAGGG GAAAAGAATG GGTATGTGAC CTGCCCCTTC AGGCCTGATT 1681 GTCCCCTGGG GAAAAGTTTT GAGGAGCTCC CAGTTTCACC TGAGATTCCG CCCAGAAAAT 1741 CCCAATACCT ACGTTCGAGG ATGCCAGAGG GGACCCGCCC AGAAGCCAAA GAGCAGCTTC 1801 TCTTTTCTGG TCAAAGTTTA GTACCAGATC ATCTGTGTGA GGAAGGAGCC CCAAATCCAT 1861 ATTTGAAAAA TTCAGTGACA GCCAGGGAAT TTCTTGTGTC TGAAAAACTT CCAGAGCACA 1921 CCAAGGGAGA AGTCTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1981 tatcaatttg ttgcaacgaa c