Construct: ORF ccsbBroadEn_13176
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017044.1_s300c1, BRDN0000396053
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLCO6A1 (133482)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 133482 | SLCO6A1 | solute carrier organic anio... | NM_001289004.2 | 99.1% | 99.2% | 393C>T;1957_1971del |
| 2 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_011543147.2 | 95.2% | 95% | (many diffs) |
| 3 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_011543148.2 | 94.3% | 92.8% | (many diffs) |
| 4 | human | 133482 | SLCO6A1 | solute carrier organic anio... | NM_001289002.2 | 90.6% | 90.6% | 393C>T;615_800del;2143_2157del |
| 5 | human | 133482 | SLCO6A1 | solute carrier organic anio... | NM_173488.5 | 90.6% | 90.6% | 393C>T;615_800del;2143_2157del |
| 6 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_005271874.3 | 90.6% | 90.6% | 393C>T;615_800del;2143_2157del |
| 7 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_011543150.1 | 70.1% | 68.5% | (many diffs) |
| 8 | human | 133482 | SLCO6A1 | solute carrier organic anio... | NM_001308014.2 | 70.1% | 70% | 393C>T;713_714ins573;1384_1398del |
| 9 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_011543153.2 | 66.9% | 66.9% | 0_1ins636;1321_1335del |
| 10 | human | 133482 | SLCO6A1 | solute carrier organic anio... | XM_011543154.3 | 44% | 44.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2022
- ORF length:
- 1956
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CGTAGGCGTC GCCCGGCACT CTGGGAGCCA GGATGAAGTC TCAAGGGGAG 121 TAGAGCCGCT GGAGGCCGCG CGGGCCCAGC CTGCTAAGGA CAGGAGGGCC AAGGGAACCC 181 CGAAGTCCTC GAAGCCCGGG AAAAAACACC GGTATCTGAG ACTACTTCCA GAGGCCTTGA 241 TAAGGTTCGG CGGTTTCCGA AAAAGGAAAA AAGCCAAGTC CTCAGTTTCC AAGAAGCCGG 301 GAGAAGTGGA TGACAGTTTG GAGCAGCCCT GTGGTTTGGG CTGCTTAGTC AGCACCTGCT 361 GTGAGTGTTG CAATAACATT CGCTGCTTCA TGATTTTCTA CTGCATCCTG CTCATATGTC 421 AAGGTGTGGT GTTTGGTCTT ATAGATGTCA GCATTGGTGA TTTTCAGAAG GAATATCAAC 481 TGAAAACCAT TGAGAAGTTG GCATTGGAAA AGAGTTACGA TATTTCATCT GGCCTGGTAG 541 CAATATTTAT AGCATTCTAT GGAGACAGAA AAAAAGTAAT ATGGTTTGTA GCTTCCTCCT 601 TTTTAATAGG ACTTGGATCA CTTTTATGTG CTTTTCCATC CATTAATGAA GAAAATAAAC 661 AAAGTAAGGT AGGAATTGAA GGTATTGCAG AATGTACATC AATGATTGGA TATGCTCTGG 721 GTTATGTGCT AGGAGCACCA CTAGTTAAAG TCCCTGAGAA TACTACTTCT GCAACAAACA 781 CTACAGTCAA TAATGGTAGT CCAGAATGGC TATGGACTTG GTGGATTAAT TTTCTTTTTG 841 CCGCTGTCGT TGCATGGTGT ACATTAATAC CATTGTCATG CTTTCCAAAC AATATGCCAG 901 GTTCAACACG GATAAAAGCT AGGAAACGTA AACAGCTTCA TTTTTTTGAC AGCAGACTTA 961 AAGATCTGAA ACTTGGAACT AATATCAAGG ATTTATGTGC TGCTCTTTGG ATTCTGATGA 1021 AGAATCCAGT GCTCATATGC CTAGCTCTGT CAAAAGCTAC AGAATATTTA GTTATTATTG 1081 GAGCTTCTGA ATTTTTGCCT ATATATTTAG AAAATCAGTT TATATTAACA CCCACTGTGG 1141 CAACTACACT TGCAGGACTT GTTTTAATTC CAGGAGGTGC ACTTGGCCAG CTTCTGGGAG 1201 GTGTCATTGT TTCCACATTA GAAATGTCTT GTAAAGCCCT TATGAGATTT ATAATGGTTA 1261 CATCTGTGAT ATCACTTATA CTGCTTGTGT TTATTATTTT TGTACGCTGT AATCCAGTGC 1321 AATTTGCTGG GATCAATGAA GATTATGATG GAACAGGGAA GTTGGGAAAC CTCACGGCTC 1381 CTTGCAATGA AAAATGTAGA TGCTCATCTT CAATTTATTC TTCTATATGT GGAAGAGATG 1441 ATATTGAATA TTTTTCTCCC TGCTTTGCAG GGTGTACATA TTCTAAAGCA CAAAACCAAA 1501 AAAAGATGTA CTACAATTGT TCTTGCATTA AAGAAGGATT AATAACTGCA GATGCAGAAG 1561 GTGATTTTAT TGATGCCAGA CCCGGGAAAT GTGATGCAAA GTGCTATAAG TTACCTTTGT 1621 TCATTGCTTT TATCTTTTCT ACACTTATAT TTTCTGGTTT TTCTGGTGTA CCAATCGTCT 1681 TGGCCATGAC GCGGGTTGTA CCTGACAAAC TGCGTTCTCT GGCCTTGGGT GTAAGCTATG 1741 TGATTTTGAG AATATTTGGG ACTATTCCTG GACCATCAAT CTTTAAAATG TCAGGAGAAA 1801 CTTCTTGTAT TTTACGGGAT GTTAATAAAT GTGGACACAC AGGACGTTGT TGGATATATA 1861 ACAAGACAAA AATGGCTTTC TTATTGGTAG GAATATGTTT TCTTTGCAAA CTATGCACTA 1921 TCATCTTCAC TACTATTGCA TTTTTCATAT ACAAACGTCG TCTAAATGAG AACACTGACT 1981 TCCCAGATGT AACTGTGAAG AATCCAAAAG TTAAGAAAAA AGAAGAAACT GACTTGTACC 2041 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2101 aac