Construct: ORF ccsbBroadEn_13182
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015945.1_s300c1, BRDN0000390851
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NCOA7 (135112)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001122842.3 | 10.5% | 9.6% | (many diffs) |
| 2 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010270.1 | 10.5% | 9.6% | (many diffs) |
| 3 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010271.1 | 10.5% | 9.6% | (many diffs) |
| 4 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010272.2 | 10.5% | 9.6% | (many diffs) |
| 5 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010273.2 | 10.5% | 9.6% | (many diffs) |
| 6 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010274.2 | 10.5% | 9.6% | (many diffs) |
| 7 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_024446332.1 | 10.5% | 9.6% | (many diffs) |
| 8 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001199619.2 | 10.3% | 9.5% | (many diffs) |
| 9 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001199620.2 | 10.3% | 9.5% | (many diffs) |
| 10 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_181782.5 | 10.3% | 9.5% | (many diffs) |
| 11 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_005266822.4 | 10.3% | 9.5% | (many diffs) |
| 12 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_006715340.4 | 10.3% | 9.5% | (many diffs) |
| 13 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_011535455.2 | 10.3% | 9.5% | (many diffs) |
| 14 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010269.1 | 10.3% | 9.5% | (many diffs) |
| 15 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_024446331.1 | 10.3% | 9.5% | (many diffs) |
| 16 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XR_001743165.2 | 5.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TACCAAGGAA GAGAAGAAGG AACGGAAACA AAGTTATTTT GCTCGACTGA 121 AAAAGAAAAA ACAAGCCAAA CAAAATGCAG AGACAGCCTC AGCTGTAGCT ACAAGGACTC 181 ATACTGGGAA GGAAGATAAT AATACAGTAG TTTTAGAGCC AGACAAGTGC AACATTGCTG 241 TGGAAGAGGA ATATATGACT GATGAGAAAA AAAAGAGAAA AAGTAATCAG TTAAAGGAGA 301 TCAGGCGTAC AGAACTAAAG AGATATTATA GTATTGGTGA GTATTCATGG CGTTACTGCA 361 GTATTTTCAT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 421 caatttgttg caacgaac