Transcript: Human NM_001199620.2

Homo sapiens nuclear receptor coactivator 7 (NCOA7), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
NCOA7 (135112)
Length:
6608
CDS:
517..3345

Additional Resources:

NCBI RefSeq record:
NM_001199620.2
NBCI Gene record:
NCOA7 (135112)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199620.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365134 CCCATAACTGAGGGCAATAAA pLKO_005 2224 CDS 100% 15.000 12.000 N NCOA7 n/a
2 TRCN0000376572 TCGGGAGAGGGTGGATCATTT pLKO_005 2604 CDS 100% 13.200 10.560 N NCOA7 n/a
3 TRCN0000063049 CCACAGGACATACACCTACAA pLKO.1 1577 CDS 100% 4.950 3.960 N NCOA7 n/a
4 TRCN0000370244 CAGCACTTAAAGGGAATATAT pLKO_005 3789 3UTR 100% 15.000 10.500 N NCOA7 n/a
5 TRCN0000063051 CCTGTGAGAAGCAAGATATAA pLKO.1 1973 CDS 100% 15.000 10.500 N NCOA7 n/a
6 TRCN0000241622 CAAGTTCAGTGACCACTATTA pLKO_005 3069 CDS 100% 13.200 9.240 N Ncoa7 n/a
7 TRCN0000365163 CAAGTTCAGTGACCACTATTA pLKO_005 3069 CDS 100% 13.200 9.240 N NCOA7 n/a
8 TRCN0000370199 TTGCGCTCTACAATGACATTT pLKO_005 1349 CDS 100% 13.200 9.240 N NCOA7 n/a
9 TRCN0000063048 CCTGTCCTATTGGTCATCAAA pLKO.1 3004 CDS 100% 5.625 3.938 N NCOA7 n/a
10 TRCN0000063050 GCGTACAGAACTAAAGAGATA pLKO.1 756 CDS 100% 4.950 3.465 N NCOA7 n/a
11 TRCN0000063052 CCTGTGCATCAAAGTGGGAAA pLKO.1 2490 CDS 100% 4.050 2.835 N NCOA7 n/a
12 TRCN0000370200 CAGTACGGCAAACGGAGAAAG pLKO_005 2557 CDS 100% 10.800 6.480 N NCOA7 n/a
13 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4834 3UTR 100% 10.800 5.400 Y SMIM11A n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4670 3UTR 100% 13.200 6.600 Y LIAS n/a
15 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 402 5UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199620.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13182 pDONR223 100% 10.3% 9.5% None (many diffs) n/a
2 ccsbBroad304_13182 pLX_304 0% 10.3% 9.5% V5 (many diffs) n/a
3 TRCN0000469663 GCAACAAATTGTTCGGTCACAAAC pLX_317 100% 10.3% 9.5% V5 (many diffs) n/a
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