Construct: ORF ccsbBroadEn_13204
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001946.1_s300c1, BRDN0000393909
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM37 (140738)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 140738 | TMEM37 | transmembrane protein 37 | XM_005263598.4 | 100% | 100% | |
| 2 | human | 140738 | TMEM37 | transmembrane protein 37 | XM_006712300.3 | 100% | 100% | |
| 3 | human | 140738 | TMEM37 | transmembrane protein 37 | NM_183240.3 | 54.2% | 54.2% | 1_261del |
| 4 | human | 140738 | TMEM37 | transmembrane protein 37 | XM_011510659.2 | 50.9% | 50.9% | 1_297del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 375
- ORF length:
- 309
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CCTGGTACGC AGCGTGGGCG CCTTGGCCGT GGTGGCCGCC ATTTTTGGCC 121 TGGAGTTCCT CATGGTGTCC CAGTTGTGCG AGGACAAACA CTCACAGTGC AAGTGGGTCA 181 TGGGTTCCAT CCTCCTCCTG GTGTCTTTCG TCCTCTCCTC CGGCGGGCTC CTGGGTTTTG 241 TGATCCTCCT CAGGAACCAA GTCACACTCA TCGGCTTCAC CCTAATGTTT TGGTGCGAAT 301 TCACTGCCTC CTTCCTCCTC TTCCTGAACG CCATCAGCGG CCTTCACATC AACAGCATCA 361 CCCATCCCTG GGAATGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c