Construct: ORF ccsbBroadEn_13206
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012296.1_s300c1, BRDN0000394566
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00266-1 (140849)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 140849 | LINC00266-1 | long intergenic non-protein... | NR_040415.1 | 29.4% | 1_377del;591_723del | |
| 2 | human | 441123 | LINC00266-3 | long intergenic non-protein... | NR_109817.1 | 15.5% | 1_353del;383T>C;442_443ins124 | |
| 3 | human | 728323 | LINC01881 | long intergenic non-protein... | NR_130700.1 | 13.4% | (many diffs) | |
| 4 | human | 728323 | LINC01881 | long intergenic non-protein... | NR_130699.1 | 12.7% | (many diffs) | |
| 5 | human | 728323 | LINC01881 | long intergenic non-protein... | NR_130701.1 | 12% | (many diffs) | |
| 6 | human | 346288 | SEPTIN14 | septin 14 | NM_207366.3 | 10.8% | 10.3% | (many diffs) |
| 7 | human | 346288 | SEPTIN14 | septin 14 | XM_011515373.2 | 10.8% | 10.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 282
- ORF length:
- 213
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATTCAACAG GAGGAGATAA GGAAGCTCGA GGAAGAGAAA AAACAACTGG 121 AAGGAGAAAT CATAGATTTT TATAAAATGA AAGCTGCCTC TGAAGCACTG CAGACTCAGC 181 TGAGCACTGA TACAAAGAAA GACAAACATC CTGATCCATA TGAATTCCTC TTATTAAGAA 241 AAATAAAGCA TCCAGGATTC AATGAAGAAC TATCACCTTG TTTGCCAACT TTCTTGTACA 301 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac