Construct: ORF ccsbBroadEn_13211
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002915.1_s300c1, BRDN0000391585
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITLN2 (142683)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 142683 | ITLN2 | intelectin 2 | XM_024453321.1 | 99.8% | 99.6% | 305G>A |
| 2 | human | 142683 | ITLN2 | intelectin 2 | NM_080878.3 | 99.5% | 99.3% | 76_78delGCA;308G>A |
| 3 | human | 142683 | ITLN2 | intelectin 2 | XM_011509210.1 | 99.5% | 99.3% | 76_78delGCA;308G>A |
| 4 | human | 55600 | ITLN1 | intelectin 1 | NM_017625.3 | 81.6% | 80.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1041
- ORF length:
- 972
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGTCCATG CTGAGGACAA TGACCAGACT CTGCTTCCTG TTATTCTTCT 121 CTGTGGCCAC CAGTGGGTGC AGTGCAGCAG CCTCTTCTCT TGAGATGCTC TCGAGGGAAT 181 TCGAAACCTG TGCCTTCTCC TTTTCTTCCC TGCCTAGAAG CTGCAAAGAA ATCAAGGAAC 241 GCTGCCATAG TGCAGGTGAT GGCCTGTATT TTCTCCGCAC CAAGAATGGT GTTGTCTACC 301 AGACCTTCTG TGACATGACT TCTGGGGGTG GCGGCTGGAC CCTGGTGGCC AGCGTGCACG 361 AGAATGACAT GCATGGGAAG TGCACGGTGG GTGATCGCTG GTCCAGTCAG CAGGGCAACA 421 AAGCAGACTA CCCAGAGGGG GATGGCAACT GGGCCAACTA CAACACCTTT GGATCTGCAG 481 AGGCGGCCAC GAGCGATGAC TACAAGAACC CTGGCTACTA CGACATCCAG GCCAAGGACC 541 TGGGCATCTG GCATGTGCCC AACAAGTCCC CCATGCAGCA TTGGAGAAAC AGCGCCCTGC 601 TGAGGTACCG CACCAACACT GGCTTCCTCC AGAGACTGGG ACATAATCTG TTTGGCATCT 661 ACCAGAAATA CCCAGTGAAA TACAGATCAG GGAAATGTTG GAATGACAAT GGCCCAGCCA 721 TACCTGTGGT CTATGACTTT GGTGATGCTA AGAAGACTGC ATCTTATTAC TCACCGTATG 781 GTCAACGGGA ATTTGTTGCA GGATTCGTTC AGTTCCGGGT GTTTAATAAC GAGAGAGCAG 841 CCAACGCCCT TTGTGCTGGG ATAAAAGTTA CTGGCTGTAA CACTGAGCAT CACTGCATCG 901 GTGGAGGAGG GTTCTTCCCA CAGGGCAAAC CCCGTCAGTG TGGGGACTTC TCCGCCTTTG 961 ACTGGGATGG ATATGGAACT CACGTTAAGA GCAGCTGCAG TCGGGAGATA ACGGAGGCGG 1021 CTGTACTCTT GTTCTATAGA TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1081 attgcttatc aatttgttgc aacgaac