Construct: ORF ccsbBroadEn_13316
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001488.1_s300c1, BRDN0000397383
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC12A (160364)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_001300730.2 | 100% | 100% | |
| 2 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719036.3 | 92.6% | 92.6% | 1_51del |
| 3 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520573.2 | 92.2% | 92.2% | 1_51del;691_693delTGG |
| 4 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719035.3 | 91.8% | 91.8% | 1_51del;691_696delTGCAGG |
| 5 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_138337.6 | 80.3% | 80.3% | 640_795del |
| 6 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_005253324.2 | 80.3% | 80.3% | 640_795del |
| 7 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520570.1 | 80.3% | 80.3% | 640_795del |
| 8 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_001207010.2 | 77.4% | 77.4% | 1_30del;670_825del |
| 9 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719033.3 | 75.5% | 75.5% | 1_51del;691_846del |
| 10 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_201623.4 | 67.9% | 67.5% | 91_92ins99;541_696del |
| 11 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520571.2 | 63.8% | 63.4% | 1_51del;142_143ins99;592_747del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 705
- ORF length:
- 639
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGAAGAAGTT ACTTATGCAG ATCTTCAATT CCAGAACTCC AGTGAGATGG 121 AAAAAATCCC AGAAATTGGC AAATTTGGGG AAAAAGCACC TCCAGCTCCC TCTCATGTAT 181 GGCGTCCAGC AGCCTTGTTT CTGACTCTTC TGTGCCTTCT GTTGCTCATT GGATTGGGAG 241 TCTTGGCAAG CATGTTTCAC GTAACTTTGA AGATAGAAAT GAAAAAAATG AACAAACTAC 301 AAAACATCAG TGAAGAGCTC CAGAGAAATA TTTCTCTACA ACTGATGAGT AACATGAATA 361 TCTCCAACAA GATCAGGAAC CTCTCCACCA CACTGCAAAC AATAGCCACC AAATTATGTC 421 GTGAGCTATA TAGCAAAGAA CAAGAGCACA AATGTAAGCC TTGTCCAAGG AGATGGATTT 481 GGCATAAGGA CAGCTGTTAT TTCCTAAGTG ATGATGTCCA AACATGGCAG GAGAGTAAAA 541 TGGCCTGTGC TGCTCAGAAT GCCAGCCTGT TGAAGATAAA CAACAAAAAT GCATTGGAAT 601 TTATAAAATC CCAGAGTAGA TCATATGACT ATTGGCTGGG ATTATCTCCT GAAGAAGATT 661 CCACTCGTGG TATGAGAGTG GATAATATAA TCAACTCCTC TGCCTGCCCA ACTTTCTTGT 721 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c