Construct: ORF ccsbBroadEn_13319
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008902.1_s300c1, BRDN0000455719
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC122 (160857)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_017020399.1 | 84.1% | 80.6% | (many diffs) |
| 2 | human | 160857 | CCDC122 | coiled-coil domain containi... | NM_144974.5 | 83.2% | 75.2% | (many diffs) |
| 3 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_017020397.2 | 83.2% | 75.2% | (many diffs) |
| 4 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_017020398.1 | 81.7% | 81.4% | (many diffs) |
| 5 | human | 160857 | CCDC122 | coiled-coil domain containi... | NM_001350617.2 | 42.8% | 35.8% | (many diffs) |
| 6 | human | 160857 | CCDC122 | coiled-coil domain containi... | NM_001350618.1 | 42.8% | 35.8% | (many diffs) |
| 7 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449322.1 | 42.8% | 35.8% | (many diffs) |
| 8 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449323.1 | 42.8% | 35.8% | (many diffs) |
| 9 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449324.1 | 42.8% | 35.8% | (many diffs) |
| 10 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449325.1 | 42.8% | 35.8% | (many diffs) |
| 11 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449326.1 | 42.8% | 35.8% | (many diffs) |
| 12 | human | 160857 | CCDC122 | coiled-coil domain containi... | XM_024449327.1 | 42.8% | 35.8% | (many diffs) |
| 13 | human | 112267959 | LOC112267959 | uncharacterized protein C9o... | XM_024446606.1 | 17.9% | 15.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 921
- ORF length:
- 852
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAGACAAC AAAGAAAGGA AGAGTCAAGG ATTTCCTAAA GAAGATAACC 121 AAGACACAAG TTCATTAGCT GATGCTGTAG AGAAAGTTGC AAAGCAACAA CAATCACAAG 181 CATCAGAGAT AGAAAAAAAC AAAAAGGTTC TGTTCAATTT GAAGAATGAA CTTCATGAGC 241 TTGAAAAAGA AATAGCAGCT ATCTCTGCAG AAACTAAAGA AACAGAAAGA CAAATTTATC 301 AACAAGATTC TGCCATAGAG AATACCAAAC TTCATTGTGA TAGCCTGGAA ACTCAAATCA 361 AATCCTTACA TTCAGAAAAT GTAAAGCTTA AATTTGACAT AGAAACAGCC CAAGAAGATT 421 TTGAGGAACA CATGATAAAA TATAATGCAT ATTATGCAAA AATAAAAGCA CATAAAAATA 481 GTTTGGGGGA AGTAGAGAGC AAATGGTCAT TTATGACTGA ACTCCATGAA AAGCGAGATT 541 TTGTTAAAAA ATTAAAGACA ATGAAAGAAG AACTTATGCA AGATCTTCAA AATCCAGGAG 601 GGAACCGAAT AACACAAGTA CAGGAAGACA TTACAAACTT AAAGGATAAA ATTATAACTG 661 TAAAAGAATC TATCATTGAA AAAACTTGTT TTCTTGAGGA AGAAAAAAAG ACACATGAAA 721 AATTAAGAAA AGAAATAGAG GGTCTCGCCC CATCGCCCAG GCTGGAGTGC AGTAGTGCAA 781 TCTCGGCTCA CTGCAAGCTC TGCCTCCCAG GTTCACGCCA TTCTCCTGCC TCAGCCTCCG 841 GAGTAGCTGG GACTACAGGC GCCTGCCACC ACACCCAGCT AATTTTTTGC ATTTTTAGTA 901 GAGACGGGGT TTCACCATGT TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 961 attgcttatc aatttgttgc aacgaac