Construct: ORF ccsbBroadEn_13330
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008458.1_s300c1, BRDN0000389923
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF433 (163059)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308351.1 | 100% | 100% | |
| 2 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308355.1 | 100% | 100% | |
| 3 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308357.1 | 100% | 100% | |
| 4 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_006722661.3 | 100% | 100% | |
| 5 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308348.1 | 95.2% | 95.2% | 1_96del |
| 6 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308346.1 | 94.9% | 94.9% | 1_102del |
| 7 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527728.2 | 94.9% | 94.9% | 1_102del |
| 8 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527729.2 | 94.9% | 94.9% | 1_102del |
| 9 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001080411.2 | 94.7% | 94.7% | 1_105del |
| 10 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527725.2 | 93.2% | 93.2% | 1_138del |
| 11 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_017026413.1 | 93.2% | 93.2% | 1_138del |
| 12 | human | 90589 | ZNF625 | zinc finger protein 625 | NM_145233.4 | 44.5% | 38.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1980
- ORF length:
- 1914
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA AGAAACCTTC AGGAACCTGG CCTCTATAGG GAAAAAATGG AAACCCCAGA 121 ACATATATGT AGAGTACGAA AATCTAAGGA GAAACCTAAG AATTGTGGGA GAGAGACTCT 181 TTGAAAGTAA AGAAGGTCAT CAGCATGGAG AAATTTTGAC CCAGGTTCCA GATGACATGC 241 TGAAGAAAAC AACTACTGGA GTAAAATCAT GCGAAAGCAG TGTGTATGGA GAAGTAGGCA 301 GTGCTCATTC ATCTCTTAAT AGGCACATCA GAGATGACAC TGGACACAAG GCATATGAGT 361 ATCAAGAATA TGGACAGAAA CCATATAAAT GTAAATACTG TAAAAAACCT TTCAACTGTC 421 TCTCCTCTGT TCAGACACAT GAAAGGGCTC ATAGTGGAAG GAAACTCTAT GTTTGTGAGG 481 AATGCGGAAA AACATTTATT TCCCATTCAA ACCTTCAAAG ACACAGGATA ATGCACCGTG 541 GAGATGGACC TTATAAGTGT AAATTTTGTG GGAAAGCCTT GATGTTTCTC AGTTTGTATC 601 TTATCCACAA ACGAACTCAC ACTGGAGAGA AACCATATCA ATGTAAACAG TGTGGTAAAG 661 CCTTTAGTCA TTCTAGTAGC CTTCGAATAC ATGAAAGAAC TCACACTGGG GAGAAGCCTT 721 ATAAATGTAA TGAATGTGGG AAAGCATTCC ATAGTTCCAC ATGCCTTCAT GCTCATAAAA 781 GAACTCACAC TGGGGAGAAG CCATATGAAT GTAAACAGTG TGGGAAAGCC TTCAGCTCTT 841 CCCATTCCTT TCAAATACAT GAAAGAACTC ACACGGGGGA GAAGCCATAT GAATGTAAGG 901 AATGTGGAAA AGCATTCAAG TGTCCCAGTT CTGTTCGCAG ACATGAAAGA ACCCACTCTA 961 GGAAAAAACC CTATGAATGT AAACATTGTG GGAAAGTATT ATCTTATCTT ACCAGCTTTC 1021 AAAACCACTT GGGAATGCAC ACTGGAGAGA TATCTCATAA ATGTAAGATA TGTGGGAAAG 1081 CCTTTTATTC TCCCAGTTCA CTTCAAACAC ATGAAAAAAC TCACACTGGA GAGAAACCCT 1141 ATAAATGCAA CCAATGTGGT AAAGCCTTTA ATTCTTCCAG TTCCTTCCGA TATCATGAAA 1201 GAACTCACAC TGGAGAGAAA CCTTACGAGT GTAAGCAATG TGGGAAAGCC TTCAGATCTG 1261 CCTCACTCCT TCAAACACAT GGTAGGACTC ACACGGGAGA GAAACCCTAT GCATGTAAGG 1321 AATGTGGAAA ACCATTTAGT AATTTCTCTT TCTTTCAAAT ACATGAAAGG ATGCACAGAG 1381 AAGAGAAGCC GTATGAATGT AAGGGTTATG GGAAAACATT CAGTTTGCCC AGTTTATTTC 1441 ATAGACATGA AAGGACTCAC ACTGGAGGAA AAACCTATGA ATGCAAGCAG TGTGGCAGAT 1501 CCTTCAACTG TTCGAGCTCC TTTCGATATC ATGGAAGGAC TCACACTGGA GAGAAACCCT 1561 ATGAATGCAA GCAATGTGGA AAAGCCTTCA GATCTGCCTC ACAGCTTCAA ATTCATGGAA 1621 GGACTCACAC TGGAGAGAAA CCTTATGAAT GTAAGCAGTG TGGGAAAGCC TTTGGATCTG 1681 CCTCACACCT TCAAATGCAT GGAAGGACTC ACACTGGAGA GAAACCCTAT GAATGTAAGC 1741 AGTGTGGGAA GTCTTTTGGA TGTGCCTCGC GACTTCAAAT GCATGGAAGG ACTCACACTG 1801 GAGAGAAACC GTATAAATGT AAGCAATGTG GGAAAGCTTT TGGATGTCCC TCAAACCTTC 1861 GAAGGCATGG AAGGACTCAC ACTGGAGAGA AACCCTATAA ATGTAACCAA TGTGGTAAAG 1921 TCTTTAGATG TTCTTCACAA CTTCAAGTGC ATGGAAGGGC TCACTGCATA GACACCCCAT 1981 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2041 acgaac