Construct: ORF ccsbBroadEn_13342
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004098.1_s300c1, BRDN0000394365
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC4F (165530)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 165530 | CLEC4F | C-type lectin domain family... | NM_001321308.2 | 100% | 100% | |
| 2 | human | 165530 | CLEC4F | C-type lectin domain family... | NM_001258027.2 | 98.1% | 97.8% | (many diffs) |
| 3 | human | 165530 | CLEC4F | C-type lectin domain family... | NM_173535.3 | 94.6% | 94.4% | (many diffs) |
| 4 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532642.2 | 89.6% | 89.1% | (many diffs) |
| 5 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532639.2 | 83.7% | 83.7% | 178_507del |
| 6 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532638.2 | 83% | 81.1% | 178_507del;1989_1996delCTCCCTAG;2031_2032insTAACAGTA |
| 7 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532643.1 | 82.2% | 80.4% | (many diffs) |
| 8 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532640.2 | 82.1% | 81.9% | (many diffs) |
| 9 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532635.2 | 79.8% | 79.6% | (many diffs) |
| 10 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532637.2 | 79.8% | 79.6% | (many diffs) |
| 11 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_017003519.1 | 79.8% | 79.6% | (many diffs) |
| 12 | human | 165530 | CLEC4F | C-type lectin domain family... | XM_011532641.2 | 69.4% | 68.5% | 178_507del;1717_1718ins152;1740_1741ins139 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1770
- ORF length:
- 1701
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACGGTGAG GCAGTCCGCT TCTGCACAGA TAACCAGTGT GTCTCCCTGC 121 ACCCCCAAGA GGTGGACTCT GTGGCAATGG CTCCTGCAGC CCCCAAGATA CCGAGGCTCG 181 TTCAGGCTAC CCCGGCATTT ATGGCTGTGA CCTTGGTCTT CTCTCTTGTG ACTCTCTTTG 241 TAGTGGTTCA ACAGCAGACA AGACCTGTTC CGAAGCCTGT GCAAGCCGTA ATTCTGGGAG 301 ACAACATTAC TGGGCATTTA CCTTTTGAAC CCAACAATCA TCACCACTTT GGCAGGGAGG 361 CAGAAATGCG AGAGCTTATC CAGACATTTA AAGGCCACAT GGAGAATTCC AGTGCCTGGG 421 TAGTAGAAAT CCAGATGTTG AAGTGCAGAG TGGACAATGT CAATTCGCAG CTCCAGGTGC 481 TCGGTGATCA TCTGGGAAAC ACCAATGCTG ACATCCAGAT GGTAAAAGGA GTTCTAAAGG 541 ATGCCACTAC ATTGAGTTTG CAGACACAGA TGTTAAGGAG TTCCCTGGAG GGAACCAATG 601 CTGAGATCCA GAGGCTCAAG GAAGACCTTG AAAAGGCAGA TGCTTTAACT TTCCAGACGC 661 TGAATTTCTT AAAAAGCAGT TTAGAAAACA CCAGCATTGA GCTCCACGTG CTAAGCAGAG 721 GCTTAGAAAA TGCAAACTCT GAAATTCAGA TGTTGAATGC CAGTTTGGAA ACGGCAAATA 781 CCCAGGCTCA GTTAGCCAAT AGCAGTTTAA AGAACGCTAA TGCTGAGATC TATGTTTTGA 841 GAGGCCATCT AGATAGTGTC AATGACTTGA GGACCCAGAA CCAGGTTTTA AGAAATAGTT 901 TGGAAGGAGC CAATGCTGAG ATCCAGGGAC TAAAGGAAAA TTTGCAGAAC ACAAATGCTT 961 TAAACTCCCA GACCCAGGCC TTTATAAAAA GCAGTTTTGA CAACACTAGT GCTGAGATCC 1021 AGTTCTTAAG AGGTCATTTG GAAAGAGCTG GTGATGAAAT TCACGTGTTA AAAAGGGATT 1081 TGAAAATGGT CACAGCCCAG ACCCAAAAAG CAAATGGCCG TCTGGACCAG ACAGATACTC 1141 AGATTCAGGT ATTCAAGTCA GAGATGGAAA ATGTGAATAC CTTAAATGCC CAGATTCAGG 1201 TCTTAAATGG TCATATGAAA AATGCCAGCA GAGAGATACA GACCCTAAAA CAAGGAATGA 1261 AGAATGCTTC AGCCTTAACT TCCCAGACCC AGATGTTAGA CAGCAATCTG CAGAAGGCCA 1321 GTGCCGAGAT CCAGAGGTTA AGAGGGGATC TAGAGAACAC CAAAGCTCTA ACCATGGAAA 1381 TCCAGCAGGA GCAGAGTCGC CTGAAGACCC TCCATGTGGT CATTACTTCA CAGGAACAGC 1441 TACAAAGAAC CCAAAGTCAG CTTCTCCAGA TGGTCCTGCA AGGCTGGAAG TTCAATGGTG 1501 GAAGCTTATA TTATTTTTCT AGTGTCAAGA AGTCTTGGCA TGAGGCTGAG CAGTTCTGCG 1561 TGTCCCAGGG AGCCCATCTG GCATCTGTGG CCTCCAAGGA GGAGCAGGCA TTTCTGGTAG 1621 AGTTCACAAG TAAAGTGTAC TACTGGATCG GTCTCACTGA CAGGGGCACA GAGGGCTCCT 1681 GGCGCTGGAC AGATGGGACA CCATTCAACG CCGCCCAGAA CAAAGCGAGC CACAGCACCA 1741 GGAAGGGATG CTGCCTTCAT CTAACAGTAT TGCCAACTTT CTTGTACAAA GTtggcatta 1801 taagaaagca ttgcttatca atttgttgca acgaac