Construct: ORF ccsbBroadEn_13348
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010492.1_s300c1, BRDN0000387185
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DCP2 (167227)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 167227 | DCP2 | decapping mRNA 2 | NM_001242377.2 | 100% | 100% | |
| 2 | human | 167227 | DCP2 | decapping mRNA 2 | NM_152624.6 | 91.6% | 91.6% | 942_1046del |
| 3 | human | 167227 | DCP2 | decapping mRNA 2 | XM_017009163.1 | 87.9% | 87.6% | (many diffs) |
| 4 | human | 167227 | DCP2 | decapping mRNA 2 | XR_001742031.1 | 12.1% | (many diffs) | |
| 5 | human | 167227 | DCP2 | decapping mRNA 2 | NR_038352.2 | 9.4% | (many diffs) | |
| 6 | mouse | 70640 | Dcp2 | decapping mRNA 2 | NM_027490.1 | 81.6% | 85.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1221
- ORF length:
- 1155
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GACCAAACGG GTGGAGATTC CCGGCAGCGT CCTGGACGAT CTCTGCAGCC 121 GATTTATTTT GCATATTCCC AGCGAGGAAA GAGACAATGC AATCCGAGTG TGTTTTCAGA 181 TTGAACTTGC CCATTGGTTT TACTTGGATT TCTACATGCA GAACACACCA GGATTACCTC 241 AGTGTGGGAT AAGAGACTTT GCTAAAGCTG TCTTCAGTCA TTGTCCGTTT TTGCTGCCTC 301 AAGGTGAAGA TGTGGAAAAA GTTTTGGATG AATGGAAGGA ATATAAAATG GGAGTACCAA 361 CATATGGTGC AATTATTCTT GATGAGACAC TTGAAAATGT ACTACTAGTT CAGGGGTACC 421 TAGCAAAATC AGGCTGGGGA TTTCCAAAAG GAAAAGTAAA TAAAGAAGAA GCTCCTCATG 481 ATTGTGCTGC TAGAGAGGTC TTTGAAGAAA CTGGTTTTGA TATCAAAGAC TATATTTGTA 541 AGGATGATTA CATTGAACTT CGAATCAATG ACCAGCTTGC TCGTTTGTAC ATCATTCCAG 601 GAATTCCAAA AGACACAAAA TTTAACCCAA AAACTAGAAG AGAAATTCGG AACATTGAGT 661 GGTTCTCTAT TGAGAAATTG CCTTGTCATA GAAATGATAT GACCCCCAAA TCCAAACTTG 721 GTTTGGCACC TAACAAATTT TTTATGGCCA TTCCCTTTAT CAGACCATTA AGGGACTGGC 781 TTTCTCGAAG ATTTGGCGAT TCCTCAGACA GTGACAATGG ATTTTCCTCA ACTGGTAGCA 841 CGCCGGCTAA ACCCACTGTG GAAAAATTGA GTCGAACCAA ATTCCGCCAC AGTCAGCAGT 901 TATTTCCTGA CGGTTCTCCT GGTGACCAGT GGGTAAAGCA CAGGCAACCA CTGCAGCAAA 961 AGCCATATAA TAATCATTCT GAAATGTCTG ACCTTTTAAA AGGAAAGAAG TGTGAAAAGA 1021 AACTTCATCC ACGGAAACTT CAGGATAATT TTGAAACAGA TGCTGTATAT GACTTGCCTA 1081 GCTCCAGTGA AGACCAGTTG CTAGAACATG CTGAGGGACA GCCCGTGGCA TGTAATGGAC 1141 ATTGCAAGTT CCCCTTTTCA TCCAGAGCCT TTTTGAGTTT CAAGTTTGAC CATAATGCTA 1201 TAATGAAAAT CTTGGACCTT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1261 attgcttatc aatttgttgc aacgaac