Construct: ORF ccsbBroadEn_13362
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001795.1_s300c1, BRDN0000397136
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COX7B2 (170712)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | NM_130902.3 | 98.7% | 98.7% | 1_3delATG |
| 2 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_005248056.4 | 98.7% | 98.7% | 1_3delATG |
| 3 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513630.2 | 98.7% | 98.7% | 1_3delATG |
| 4 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513631.2 | 98.7% | 98.7% | 1_3delATG |
| 5 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513632.2 | 98.7% | 98.7% | 1_3delATG |
| 6 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513633.2 | 98.7% | 98.7% | 1_3delATG |
| 7 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513634.2 | 98.7% | 98.7% | 1_3delATG |
| 8 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513635.2 | 98.7% | 98.7% | 1_3delATG |
| 9 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513636.1 | 98.7% | 98.7% | 1_3delATG |
| 10 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513637.2 | 98.7% | 98.7% | 1_3delATG |
| 11 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513638.2 | 98.7% | 98.7% | 1_3delATG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 306
- ORF length:
- 240
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TCCCTTGGCC AGAAATGCAC TAAGCAGTCT CAAGATTCAA AGCATTCTGC 121 AAAGCATGGC AAGACATAGC CATGTAAAAC ACTCACCAGA TTTTCATGAT AAATATGGTA 181 ATGCTGTGCT AGCCAGTGGA ACTGCTTTCT GTGTTGCTAC ATGGGTGTTT ACAGCCACTC 241 AGATTGGAAT AGAATGGAAC CTATCCCCTG TTGGCAGAGT TACCCCAAAA GAGTGGAAAC 301 ATCAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 361 gttgcaacga ac