Construct: ORF ccsbBroadEn_13450
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017674.1_s300c1, BRDN0000387429
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB38 (253461)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | NM_001080412.3 | 27.2% | 27.2% | 1_2607del |
| 2 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | NM_001350099.2 | 27.2% | 27.2% | 1_2607del |
| 3 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | NM_001350100.2 | 27.2% | 27.2% | 1_2607del |
| 4 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_005247257.2 | 27.2% | 27.2% | 1_2607del |
| 5 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_005247258.1 | 27.2% | 27.2% | 1_2607del |
| 6 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_005247261.3 | 27.2% | 27.2% | 1_2607del |
| 7 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_017006057.1 | 27.2% | 27.2% | 1_2607del |
| 8 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_017006058.1 | 27.2% | 27.2% | 1_2607del |
| 9 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_024453431.1 | 27.2% | 27.2% | 1_2607del |
| 10 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_024453432.1 | 27.2% | 27.2% | 1_2607del |
| 11 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_024453433.1 | 27.2% | 27.2% | 1_2607del |
| 12 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_024453434.1 | 27.2% | 27.2% | 1_2607del |
| 13 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_005247256.5 | 27.2% | 27.2% | 1_2610del |
| 14 | human | 253461 | ZBTB38 | zinc finger and BTB domain ... | XM_017006050.2 | 26.6% | 26.6% | 1_2685del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1044
- ORF length:
- 978
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GGAGGAGCCT TTGCCACAGG GGAATGACCC AGAACCCAGT GGAGACAGCC 121 CACTCGGGCT TTGCCAATCC GAGTGCATGG AGATGAGTGA AGTGTTCGAT GACGCAAGTG 181 ACCAGGATTC CACTGACAAA CCGTGGCGCC CTTACTACAA CTACAAACCC AAAAAGAAAT 241 CCAGACAGTT GAAAAAAATG AGGAAAGTCA ACTGGAGGAA GGAGCACGGA AACAGGAGCC 301 CGAGCCATAA ATGTAAATAC CCAGCAGAAC TGGATTGCGC CGTGGGGAAG GCTCCTCAGG 361 ATAAACCCTT TGAGGAAGAA GAAACTAAAG AGATGCCCAA GCTGCAGTGT GAACTCTGTG 421 ATGGAGACAA AGCAGTGGGG GCTGGAAACC AAGGAAGGCC CCACCGACAT CTTACTTCTC 481 GGCCATATGC CTGCGAGCTC TGCGCCAAGC AGTTCCAGAG CCCTTCCACA CTCAAAATGC 541 ACATGAGATG TCACACCGGG GAGAAGCCAT ACCAGTGCAA GACCTGCGGA CGGTGCTTTT 601 CGGTGCAAGG AAACTTACAG AAACATGAAC GCATCCACCT GGGCTTGAAG GAGTTCGTCT 661 GTCAGTATTG CAACAAGGCA TTCACCTTGA ATGAGACCCT CAAAATCCAT GAAAGAATCC 721 ATACTGGAGA AAAGCGTTAC CACTGTCAGT TCTGCTTTCA GAGATTTTTG TATCTCTCCA 781 CCAAAAGGAA TCACGAGCAG AGGCATATTC GGGAGCATAA TGGGAAGGGC TATGCCTGCT 841 TCCAGTGCCC CAAAATTTGC AAAACAGCTG CTGCCCTTGG AATGCACCAA AAGAAACACT 901 TATTCAAAAG CCCAAGTCAG CAGGAGAAAA TAGGTGACGT GTGCCACGAA AACTCAAATC 961 CCTTGGAGAA TCAACATTTC ATTGGTTCAG AAGACAATGA CCAAAAGGAT AACATACAAA 1021 CCGGTGTGGA AAATGTTGTC CTTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1081 agcattgctt atcaatttgt tgcaacgaac