Construct: ORF ccsbBroadEn_13497
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011948.1_s300c1, BRDN0000387704
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OTOGL (283310)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283310 | OTOGL | otogelin like | XM_011538193.1 | 9.9% | 10% | 1_6045del;6114G>A |
| 2 | human | 283310 | OTOGL | otogelin like | NM_001368062.1 | 9.7% | 9.7% | 1_6225del;6294G>A |
| 3 | human | 283310 | OTOGL | otogelin like | XM_011538192.2 | 9.6% | 9.6% | 1_6258del;6327G>A |
| 4 | human | 283310 | OTOGL | otogelin like | NM_173591.3 | 9.5% | 9.5% | 1_6360del;6429G>A |
| 5 | human | 283310 | OTOGL | otogelin like | XM_005268802.3 | 9.4% | 9.4% | 1_6411del;6480G>A |
| 6 | human | 283310 | OTOGL | otogelin like | XM_011538191.1 | 9.4% | 9.4% | 1_6411del;6480G>A |
| 7 | mouse | 628870 | Otogl | otogelin-like | XM_006513932.2 | 11.3% | 11.1% | (many diffs) |
| 8 | mouse | 628870 | Otogl | otogelin-like | XM_006513933.3 | 11.3% | 11.1% | (many diffs) |
| 9 | mouse | 628870 | Otogl | otogelin-like | XM_006513931.1 | 9.6% | 9.4% | (many diffs) |
| 10 | mouse | 628870 | Otogl | otogelin-like | XM_017314041.1 | 8.5% | 8.3% | (many diffs) |
| 11 | mouse | 628870 | Otogl | otogelin-like | XM_006513929.3 | 8.3% | 8.1% | (many diffs) |
| 12 | mouse | 628870 | Otogl | otogelin-like | NM_001177567.1 | 8.3% | 8.1% | (many diffs) |
| 13 | mouse | 628870 | Otogl | otogelin-like | XM_006513928.3 | 8.2% | 8.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 741
- ORF length:
- 672
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG 61 TTAGCACCAT GATAAAGTAT TTGGAAGAAG ACTTTTGTTA TGCTATAGAG TGTCTGGAAG 121 AAAAAGATAA CCATACAGGC TTTCACACTC TGAATTTTAC ACTGGTGAAT TGTTCAAAAA 181 AATGTGATGT TCACCAGGTA TATACTCCAT CCCCAAGTGA TTATGGTTGT TGTGGTACCT 241 GCAAAAATGT ATCCTGCAAA TTTCACATGG AAAATGGAAC ATCAGTTGTA TACGCGGTAG 301 GGAGTACCTG GCACTACAAT TGCACCACAT ATGAATGTGT TAAAACTGAT GAAGGAGCAA 361 TAATTCTGAA CTACACAATG GTCTGTCCCC CTTTTAATGA GACTGAATGC AAAATGAATG 421 AAGGGATTGT GAAGCTTTAT AATGAAGGCT GTTGCAAGAT CTGCAAACGA GAAGAAAGAA 481 TATGCCAGAA AGTGATCATT AAATCGGTCA TAAGGAAACA GGACTGTATG AGCCAAAGCC 541 CTATAAATGT TGCATCTTGT GACGGCAAAT GCCCATCAGC TACCATATAT AACATCAATA 601 TTGAAAGTCA CCTAAGATTC TGCAAGTGTT GTCGTGAAAA TGGAGTACGA AACTTGTCTG 661 TGCCTCTGTA TTGCTCAGGA AATGGCACTG AAATTATGTA CACTCTCCAG GAACCCATAG 721 ACTGTACGTG CCAGTGGAAT TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 781 attgcttatc aatttgttgc aacgaac