Construct: ORF ccsbBroadEn_13500

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008799.1_s300c1, BRDN0000386972
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C12orf40 (283461)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283461 C12orf40 chromosome 12 open reading ... XM_005268806.3 100% 100%
2 human 283461 C12orf40 chromosome 12 open reading ... XM_011538231.2 100% 100%
3 human 283461 C12orf40 chromosome 12 open reading ... NM_001031748.4 88.1% 88.1% 1_231del
4 human 283461 C12orf40 chromosome 12 open reading ... NM_001319247.2 61% 60.4% (many diffs)
5 human 283461 C12orf40 chromosome 12 open reading ... NR_135051.2 50.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1791
ORF length:
1725
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TAGAGACATA AAAATGCCCC TAAGAAAGCA TAATTTAGAA CTTACAATGT
121CGCCTCACTG TGTACCTTCT AAACTCTGCC TTGATGATAC AGAAACCAAT GTAAACTGTC
181AAAGACTAAG TAGCAAGGAA GATCTTGGCC CAGTCCAGTC ACAAGGCATG GACTCATATA
241GTATGCTTCA CCCTCAGTTC AGCAAAATAG AGAACTGCAG TTTCACTCCA TCATCTTTTT
301CAGTGGAGTT ACCTTCTAAC AGACATATTT CAAAACTAAA TTTCACATCT GGAATAGCAC
361CTACTCCTCA GAAACTTGCA TATGAAAAAA AGCAGAATGA CCAGCGCAGT ACTGTTAACT
421GTTCTGATTC CTTGCTTTCC AAATTAAATA AAAGTCAAGA TGTTTTCAGT CCATCACATA
481AAACTACACG ATTTGGGACA TTATTTGAAA GATTAAACAG TCTAGGAAAT AGGAATTTAC
541TTACTAAAAG CCCTGCTGTA ATTATGGATG AAGATTGTAG AAGCACGGAT GAAATAAGAC
601AGTCAGACTA CATTACTGAA AAACACTCAA TACAGCATAT TTGGGGGAAA AATGGAAAGG
661AAGTTTCAAA TTTTCTTGAA GATGTGAACC AGTCTACTCC TAACCTTCTA TCAGAGAATT
721GTGACTCTTT TGTTAGTCAA AATATGATCA ATGTATTAAA CATAGATGAG CAAAGGATAA
781AGAAAACATT TAACAAGTGT GATTATGATA GTATGGGAGA TACTTGTGTA GTCACTAGTT
841CTGATAAAAA CCATGTCACT GACAGATGCA TTAGAAACAT TTTTACAGTT CCAGAGTTGA
901CTTTTAGTAA TTCGACTTTG AATAAAACAA GTTATCCAGA AAAATGTCAG CCAAACAAGA
961AGTATCAGAG AGAGTATAAC AAAAATGAAA GAAATGATCT TAGTACATCT TTTGAGAACG
1021ATTACTACCC AAGCAGCTCT GAAAGAAAAG AAAAATTTGA AAATGATTAC CAAGAGAAGA
1081CACCACAGAA AAGTATTCAG AAATATCCAG CAAACTCTAT GGGAAATATA CCTTCGGAAG
1141AATTGCACTC TAAGCAGTCA TGGGACTTTG GACTTGATGA GATTCTGATG GAAGAAGGAG
1201GAATATATTC TTTAAAAAGC AAGCGAATAT CTACTAAGAA AATCTCTCTT GATTCTGCAC
1261AGAGTAGTCG GTCTACTAGT TACTCTCCAA GACCAACAGA CAGCTGTTTC AGTTCTAGTT
1321CAGATTTGCC ATCTGAAGAT GAAGATCAAA TATCACAGCA AATTGAAGAT TCAAATAGGA
1381TGACCATCAA AACCAAGGAA AAAATGAATA ATTTTTATGT AGAAAGGATG GCAAAACTTT
1441CAGGTGACAG GATTGTTAAA AACGATGACA AAATTCACAA ACAGAATGAG AATTTCTACC
1501AGTTCTCAGT GAAAAATAAT ACAGATCAGT TTCCACAGTT GCAGTGCAAT TCAGCCCACA
1561TTTTGCAAAA CAAAACCAAT GATAACTGCG TTCTGCAGGC TGCAAGGTGT GATGCAGGGA
1621TACAAACAGA GAGTGAATCT GTAATGGAGG AAAAATTAGA TGTTGCCATA CAGTGTGATC
1681TAATTTCAAA ATGTACATGT AGAAGTGATG TTTCTCTTTG CAACCTTGAA AGGTGCAGTG
1741GAAATATTAA GGCAGATACC ACTGGAGGGC AGGAAATCCA TAAGAACAAC TACCCAACTT
1801TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)