Construct: ORF ccsbBroadEn_13501
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006368.1_s300c1, BRDN0000395002
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01588 (283551)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283551 | LINC01588 | long intergenic non-protein... | NR_126500.1 | 10% | (many diffs) | |
| 2 | human | 283551 | LINC01588 | long intergenic non-protein... | NR_126496.1 | 8.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 531
- ORF length:
- 462
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACAGGTCGG ATGGCAACCC TGGAAAAGTC ACACAGCTCA GCCTGTTGGA 121 GGAAGAGGAG CAGTAGAACC TGTGTGGAGC CTGACAGAAC CCAAGATGCC ATTCACGAAC 181 CGAGAGGTCT TTCAAGATCA CACACAGTTC TACGACACAG ACATTTCGTC TTCTTGCCAC 241 TCAGTAGCGG GGCCCATCCC TCTGTGCCTC CAAGGGACCA CTTCACACAC CCCTTTTTCG 301 CCTCCAGAGT AGATGGAACC GTGGAACGAG GGAATCCTGC CCTCTGGTTG TGTCTGTCAT 361 CTCCTACTGG GACCAGAGCC ACAAAAGCCA CAAAAGACCC AACTCTCTCC AGCGTGCAGG 421 CATCCCAACT AGAGGAAGCA AGGAGGCAGA GACCAAGAGG ACATCAAGAG GCGTTTGAAC 481 CCGCAGAGAG GGCCTGGGAG CACAATGCTG AGCGAGAAAG AATTGTGCCA TTGCCAACTT 541 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac