Construct: ORF ccsbBroadEn_13554

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016562.1_s300c1, BRDN0000395016
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C5orf51 (285636)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285636 C5orf51 chromosome 5 open reading f... XM_005248289.4 81.8% 76.8% (many diffs)
2 human 285636 C5orf51 chromosome 5 open reading f... NM_175921.6 46.2% 45.4% (many diffs)
3 human 285636 C5orf51 chromosome 5 open reading f... XM_011514032.2 22.1% 21% (many diffs)
4 human 285636 C5orf51 chromosome 5 open reading f... XR_001742054.1 7.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
525
ORF length:
456
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGCCGCA GTCTCTAGTG TGGTGAGACG AGTGGAAGAG CTCGGGGATC
121TGGCTCAGGC CCACATACAG CAACTTAGCG AAGCTGCCGG TGAAGATGAT CACTTTTTAA
181TTCGGGCCTC TGCAGCATTA GAAAAATTGA AACTCCTGTG TGGAGAAGAG AAAGAATGTT
241CAAATCCATC AAATCTTCTA GAACTTTACA CACAGGCTAT TTTGGACATG ACATATTTTG
301AGGAGAACAA GCTAGTAGAT GAAGATTTTC CTGAAGACTC TTCTTCACAG AAAGTAAAAG
361AGCTGATTAG TTTTCTTTCA GAACCAGAAA TTTTAGTAAA GGAAAATAAT ATGCATCCAA
421AACACTGCAA TTTGCTTGGG GATGAGCTAC TGGAATGTCT CTCCCATTTC CCGCTGTGGC
481TGAGCCAAAC TTCATTACTT TCCTTAGGCC CTCTGCCCCT CCCCTTGCCA ACTTTCTTGT
541ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)