Construct: ORF ccsbBroadEn_13561
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010259.1_s300c1, BRDN0000397575
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XKR6 (286046)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 286046 | XKR6 | XK related 6 | NM_173683.4 | 56.4% | 56.4% | 1_837del |
| 2 | human | 286046 | XKR6 | XK related 6 | XM_024447129.1 | 53.7% | 53.7% | 1_837del;962_1060del |
| 3 | mouse | 219149 | Xkr6 | X-linked Kx blood group rel... | XM_006518881.3 | 87.7% | 90% | (many diffs) |
| 4 | mouse | 219149 | Xkr6 | X-linked Kx blood group rel... | XM_006518880.3 | 81.5% | 83.6% | (many diffs) |
| 5 | mouse | 219149 | Xkr6 | X-linked Kx blood group rel... | XM_017315977.1 | 79.6% | 81.7% | (many diffs) |
| 6 | mouse | 219149 | Xkr6 | X-linked Kx blood group rel... | NM_173393.2 | 52.5% | 53.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1152
- ORF length:
- 1086
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GTATGAATAT GCAGACGTCA ACATGCTGCG CCTCCTGGAG ACCTTCCTGG 121 AGAGCGCGCC CCAACTGGTG CTACAGCTCT ACATCATGCT CCAGAAGAAC AGCGCCGAGA 181 CCCTGCCCTG TGTCTCCTCT GTGACTTCCC TGATGTCCCT GGCTTGGGTG CTAGCCTCCT 241 ATCACAAGCT GCTGCGGGAC TCCAGGGACG ACAAGAAGAG CATGAGCTAC AGAGGGGCCA 301 TCATCCAGGT CTTCTGGCGC CTCTTCACCA TCTCATCCCG AGTGATCTCT TTTGCCCTCT 361 TTGCTTCCAT CTTCCAGCTC TATTTTGGGA TCTTCGTGGT GGTTCACTGG TGCGCCATGG 421 CCTTCTGGAT CATCCATGGC GGAACAGACT TCTGCATGTC CAAGTGGGAG GAGATCCTCT 481 TCAACATGGT GGTAGGGATC GTGTACATTT TCTGCTGGTT TAACGTCAAG GAAGGGCGGA 541 CTCGATATCG AATGTTTGCA TATTATACGA TAGTCTTGAC CGAGAATGCT GCCTTGACGT 601 TCCTTTGGTA TTTTTACAGA GACCCGGAGA CCACTGACTC CTATGCGGTG CCAGCACTGT 661 GTTGTGTCTT TATTAGCTTT GTGGCTGGGA TCGCAATGAT GCTCTTATAC TATGGCGTGC 721 TGCATCCCAC AGGACCACGA GCTAAGATCC TTGCCAGCTC CTGTTGTGCC GAGCTGCTCT 781 GGGGCATCCC TTTGCCCCCC GATGTTGAGC CCATGGCGCC TGAGATCCCT GGGTACCGGG 841 GGACCCAGGT TACGCCCACC AGAGCCGTAA CGGAACAACA GGAGGATCTC ACGGCTGACA 901 CTTGCTTGCC TGTTTTCCAA GTGAGACCCA TGGGGCCCCC TACCCCGTTG GGGCGTCCTT 961 ACCTCCCAGA AGGGCCCCTC ATTAAGATTG ACATGCCAAG AAAGCGATAC CCAGCTTGGG 1021 ATGCTCATTT TGTAGACAGG AGGCTGAGAA GGACTATTAA CATTCTACAA TATGTCACCC 1081 CCACCGCAGT AGGCATTCGA TATCGAGACG GACCACTCCT CTATGAGTTG CTACAGTATG 1141 AGTCTTCACT CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1201 caatttgttg caacgaac