Construct: ORF ccsbBroadEn_13570
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000423.1_s300c1, BRDN0000455487
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRARG1 (286753)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 286753 | TRARG1 | trafficking regulator of GL... | NM_172367.3 | 99% | 97.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 600
- ORF length:
- 531
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCCACCCG GTGCAGTCCG AGTTTCCTTC AGCACAGGAG TCAGGCTCCG 121 CCGCATCCCT GGACCTGCCA GAGATGGAGA TACTCCTCAC CAAGGCAGAG AACAAGGATG 181 ACAAGACCCT GAATCTGTCC AAGACCCTCT CGGGGCCTCT GGATCTGGAG CAGAACGGCC 241 AGGGCCTACC CTTCAAGGCC ATCTCCGAGG GGCACCTGGA GGCCCCACTG CCTCGGTCCC 301 CCTCCCGGGC CAGCTCAAGG AGGGCGTCCT CCATCGCCAC CACCTCCTAT GCCCAAGACC 361 AAGAAGCCCC CAGAGATTAC CTCATCCTGG CCGTCGTCGC CTGCTTCTGC CCCGTCTGGC 421 CCCTCAACCT CATCCCCCTC ATCATTTCCA TCATGTCTCG AAGCAGCATG CAACAGGGCA 481 ACGTGGACGG CGCCCGGAGG CTGGGCCGCC TGGCTCGGCT GCTCAGCATT ACCCTCATCA 541 TCATGGGCAT CGTCATTATC ATGGTGGCCG TGACCGCCAA CTTCACAGTT CAGAAGAAAT 601 TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 661 acgaac