Construct: ORF ccsbBroadEn_13620
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004633.1_s300c1, BRDN0000387666
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C22orf34 (348645)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 348645 | C22orf34 | chromosome 22 open reading ... | XM_024452238.1 | 27.1% | 16.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 375
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCCATCCTC CAGGCACTGT GCCTCCTCCC AAAGGTCAGC ACCCCGAGCA 121 TCACTGTGCT CTCCCCACAA AGGTCAGCAG CCCCGAGCAT CACTGTGCCC TCCCCTCAAA 181 GGTCAGCGGC CCCGAGCATC ACTGTGCCCT CCCCACAAAG GTCAGCACCC CGAGCATCAC 241 TGTGCCCTCC CCACAAAGGT CAGCACCCCG AGCATCACTG TGCCCTCCCT CCCAAAGGTC 301 AGCACCCGGA GCATCACTGT GCCCTCCCCA CAAAGGTCAG CACCCCGAGC ATCACTGTGC 361 CCTCCCCACA AAGGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c