Construct: ORF ccsbBroadEn_13630

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002469.1_s300c1, BRDN0000455640
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF829 (374899)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 374899 ZNF829 zinc finger protein 829 NM_001037232.3 57.4% 56.9% 1_550del;556_557delTC
2 human 374899 ZNF829 zinc finger protein 829 XM_005258876.4 57.4% 56.9% 1_550del;556_557delTC
3 human 374899 ZNF829 zinc finger protein 829 XM_011526933.2 57.4% 56.9% 1_550del;556_557delTC
4 human 374899 ZNF829 zinc finger protein 829 NM_001171979.2 48.3% 47.9% 1_793del;799_800delTC
5 human 163087 ZNF383 zinc finger protein 383 NM_001345947.2 45.1% 43.7% (many diffs)
6 human 163087 ZNF383 zinc finger protein 383 NM_001345948.2 45.1% 43.7% (many diffs)
7 human 163087 ZNF383 zinc finger protein 383 NM_001345949.1 45.1% 43.7% (many diffs)
8 human 163087 ZNF383 zinc finger protein 383 NM_152604.2 45.1% 43.7% (many diffs)
9 human 163087 ZNF383 zinc finger protein 383 XM_005258585.3 45.1% 43.7% (many diffs)
10 human 163087 ZNF383 zinc finger protein 383 XM_011526586.3 45.1% 43.7% (many diffs)
11 human 163087 ZNF383 zinc finger protein 383 XM_011526587.3 45.1% 43.7% (many diffs)
12 human 163087 ZNF383 zinc finger protein 383 XM_011526588.3 45.1% 43.7% (many diffs)
13 human 163087 ZNF383 zinc finger protein 383 XM_011526589.3 45.1% 43.7% (many diffs)
14 human 163087 ZNF383 zinc finger protein 383 XM_011526590.3 45.1% 43.7% (many diffs)
15 human 163087 ZNF383 zinc finger protein 383 XM_017026422.2 45.1% 43.7% (many diffs)
16 human 163087 ZNF383 zinc finger protein 383 XM_017026423.2 45.1% 43.7% (many diffs)
17 human 163087 ZNF383 zinc finger protein 383 XM_017026424.2 45.1% 43.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
813
ORF length:
744
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAATAAGGAG TATGGGAAGT CCTTTAGTCG TGGCTCACTC GTTACTCGAC
121ATCAGAGGAT TCACACTGGT AAAAAACCCT ATGAATGTAA GGAATGTGGC AAGGCTTTTA
181GTTGTAGTTC ATATTTTTCT CAACATCAGA GGATTCACAC TGGTGAGAAA CCCTATGAAT
241GTAAGGAATG TGGAAAAGCC TTTAAGTATT GCTCAAACCT TAATGATCAT CAGAGAATTC
301ACACTGGTGA GAAACCCTAT GAATGTAAAG TATGTGGAAA AGCCTTTACT AAAAGTTCAC
361AACTTTTTCT ACATCTGAGA ATTCATACTG GTGAGAAACC TTATGAATGT AAAGAATGTG
421GGAAAGCCTT TACTCAACAC TCAAGGCTTA TTCAGCATCA GAGAATGCAT ACTGGTGAGA
481AACCTTATGA ATGTAAGCAG TGTGGGAAGG CCTTTAATAG TGCCTCAACA CTTACTAACC
541ATCACAGAAT TCATGCTGGT GAGAAGCTCT ATGAATGTGA AGAATGTAGA AAGGCCTTTA
601TTCAGAGCTC AGAACTTATT CAACATCAGA GAATCCATAC AGATGAAAAA CCATATGAAT
661GTAATGAATG TGGGAAGGCC TTTAATAAAG GCTCAAATCT TACTCGACAT CAGAGAATTC
721ACACTGGTGA GAAACCCTAT GACTGTAAGG AATGTGGAAA GGCTTTTGGT AGTCGCTCTG
781ACCTCATTCG CCATGAGGGA ATTCATACTG GTTTGCCAAC TTTCTTGTAC AAAGTTGGca
841ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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