Construct: ORF ccsbBroadEn_13630
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002469.1_s300c1, BRDN0000455640
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF829 (374899)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 374899 | ZNF829 | zinc finger protein 829 | NM_001037232.3 | 57.4% | 56.9% | 1_550del;556_557delTC |
| 2 | human | 374899 | ZNF829 | zinc finger protein 829 | XM_005258876.4 | 57.4% | 56.9% | 1_550del;556_557delTC |
| 3 | human | 374899 | ZNF829 | zinc finger protein 829 | XM_011526933.2 | 57.4% | 56.9% | 1_550del;556_557delTC |
| 4 | human | 374899 | ZNF829 | zinc finger protein 829 | NM_001171979.2 | 48.3% | 47.9% | 1_793del;799_800delTC |
| 5 | human | 163087 | ZNF383 | zinc finger protein 383 | NM_001345947.2 | 45.1% | 43.7% | (many diffs) |
| 6 | human | 163087 | ZNF383 | zinc finger protein 383 | NM_001345948.2 | 45.1% | 43.7% | (many diffs) |
| 7 | human | 163087 | ZNF383 | zinc finger protein 383 | NM_001345949.1 | 45.1% | 43.7% | (many diffs) |
| 8 | human | 163087 | ZNF383 | zinc finger protein 383 | NM_152604.2 | 45.1% | 43.7% | (many diffs) |
| 9 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_005258585.3 | 45.1% | 43.7% | (many diffs) |
| 10 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_011526586.3 | 45.1% | 43.7% | (many diffs) |
| 11 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_011526587.3 | 45.1% | 43.7% | (many diffs) |
| 12 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_011526588.3 | 45.1% | 43.7% | (many diffs) |
| 13 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_011526589.3 | 45.1% | 43.7% | (many diffs) |
| 14 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_011526590.3 | 45.1% | 43.7% | (many diffs) |
| 15 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_017026422.2 | 45.1% | 43.7% | (many diffs) |
| 16 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_017026423.2 | 45.1% | 43.7% | (many diffs) |
| 17 | human | 163087 | ZNF383 | zinc finger protein 383 | XM_017026424.2 | 45.1% | 43.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 813
- ORF length:
- 744
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATAAGGAG TATGGGAAGT CCTTTAGTCG TGGCTCACTC GTTACTCGAC 121 ATCAGAGGAT TCACACTGGT AAAAAACCCT ATGAATGTAA GGAATGTGGC AAGGCTTTTA 181 GTTGTAGTTC ATATTTTTCT CAACATCAGA GGATTCACAC TGGTGAGAAA CCCTATGAAT 241 GTAAGGAATG TGGAAAAGCC TTTAAGTATT GCTCAAACCT TAATGATCAT CAGAGAATTC 301 ACACTGGTGA GAAACCCTAT GAATGTAAAG TATGTGGAAA AGCCTTTACT AAAAGTTCAC 361 AACTTTTTCT ACATCTGAGA ATTCATACTG GTGAGAAACC TTATGAATGT AAAGAATGTG 421 GGAAAGCCTT TACTCAACAC TCAAGGCTTA TTCAGCATCA GAGAATGCAT ACTGGTGAGA 481 AACCTTATGA ATGTAAGCAG TGTGGGAAGG CCTTTAATAG TGCCTCAACA CTTACTAACC 541 ATCACAGAAT TCATGCTGGT GAGAAGCTCT ATGAATGTGA AGAATGTAGA AAGGCCTTTA 601 TTCAGAGCTC AGAACTTATT CAACATCAGA GAATCCATAC AGATGAAAAA CCATATGAAT 661 GTAATGAATG TGGGAAGGCC TTTAATAAAG GCTCAAATCT TACTCGACAT CAGAGAATTC 721 ACACTGGTGA GAAACCCTAT GACTGTAAGG AATGTGGAAA GGCTTTTGGT AGTCGCTCTG 781 ACCTCATTCG CCATGAGGGA ATTCATACTG GTTTGCCAAC TTTCTTGTAC AAAGTTGGca 841 ttataagaaa gcattgctta tcaatttgtt gcaacgaac