Construct: ORF ccsbBroadEn_13748
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008661.1_s300c1, BRDN0000387593
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- POM121C (100101267)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100289561 | LOC100289561 | uncharacterized LOC100289561 | NM_001242713.3 | 60.1% | 48% | (many diffs) |
| 2 | human | 100289561 | LOC100289561 | uncharacterized LOC100289561 | NM_001347879.2 | 60.1% | 48% | (many diffs) |
| 3 | human | 100289561 | LOC100289561 | uncharacterized LOC100289561 | NM_001347880.2 | 60.1% | 48% | (many diffs) |
| 4 | human | 105375356 | LOC105375356 | uncharacterized LOC105375356 | XR_927684.2 | 20.5% | (many diffs) | |
| 5 | human | 105375356 | LOC105375356 | uncharacterized LOC105375356 | XR_001744951.1 | 13.2% | (many diffs) | |
| 6 | human | 105375356 | LOC105375356 | uncharacterized LOC105375356 | XR_001756281.1 | 13.2% | (many diffs) | |
| 7 | human | 100101267 | POM121C | POM121 transmembrane nucleo... | NR_160304.1 | 12.6% | 1_524del;744_1732del | |
| 8 | human | 100101267 | POM121C | POM121 transmembrane nucleo... | NR_160303.1 | 12.5% | 1_543del;763_1751del | |
| 9 | human | 57786 | RBAK | RB associated KRAB zinc finger | NM_001204456.2 | 8.2% | 7.1% | (many diffs) |
| 10 | human | 57786 | RBAK | RB associated KRAB zinc finger | NM_021163.4 | 8.2% | 7.1% | (many diffs) |
| 11 | human | 105375356 | LOC105375356 | uncharacterized LOC105375356 | XR_001744952.1 | 4.7% | (many diffs) | |
| 12 | human | 105375356 | LOC105375356 | uncharacterized LOC105375356 | XR_001756282.1 | 4.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 288
- ORF length:
- 219
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAACACATTG CAGGGGCCAG TGTCATTCAA AGATGTGGCT GTGGATTTCA 121 CCCAGGAGGA GTGGCGGCAA CTGGACCCTG ATGAGAAGAT AACATACGGG GATGTGATGT 181 TGGAGAACTA CAGCCATCTA GTTTCCTTGG CTTATGAGGT GGCAACATCT TGTACTTCGG 241 AGATTCTGAA GCCGAGCAAC TTGCCCAAGT CCTTCTTCTT TTCCCATTTG CCAACTTTCT 301 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac