Construct: ORF ccsbBroadEn_13826
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001049.1_s300c1, BRDN0000396448
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD47 (961)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 961 | CD47 | CD47 molecule | NM_198793.2 | 99.8% | 99% | 907delA |
| 2 | human | 961 | CD47 | CD47 molecule | XM_005247908.2 | 97.5% | 96.7% | 907delA;912_922delinsT;926_936del |
| 3 | human | 961 | CD47 | CD47 molecule | XM_005247909.2 | 96.1% | 95.7% | 877_878insCTTCC;879_880ins30 |
| 4 | human | 961 | CD47 | CD47 molecule | NM_001777.3 | 94.2% | 93.4% | 907delA;912_922delinsT;926_969del |
| 5 | human | 961 | CD47 | CD47 molecule | XR_241522.2 | 17.9% | (many diffs) | |
| 6 | human | 961 | CD47 | CD47 molecule | XR_924218.2 | 17.8% | (many diffs) | |
| 7 | human | 961 | CD47 | CD47 molecule | XR_001740374.2 | 17.7% | (many diffs) | |
| 8 | human | 961 | CD47 | CD47 molecule | XR_241521.2 | 17.7% | (many diffs) | |
| 9 | human | 961 | CD47 | CD47 molecule | XR_924220.2 | 17.6% | (many diffs) | |
| 10 | human | 961 | CD47 | CD47 molecule | XR_924219.2 | 17.6% | (many diffs) | |
| 11 | human | 961 | CD47 | CD47 molecule | XR_001740375.2 | 17.5% | (many diffs) | |
| 12 | human | 961 | CD47 | CD47 molecule | XR_002959611.1 | 10.8% | (many diffs) | |
| 13 | human | 961 | CD47 | CD47 molecule | XR_002959610.1 | 8.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 981
- ORF length:
- 915
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGTG GCCCCTGGTA GCGGCGCTGT TGCTGGGCTC GGCGTGCTGC GGATCAGCTC 121 AGCTACTATT TAATAAAACA AAATCTGTAG AATTCACGTT TTGTAATGAC ACTGTCGTCA 181 TTCCATGCTT TGTTACTAAT ATGGAGGCAC AAAACACTAC TGAAGTATAC GTAAAGTGGA 241 AATTTAAAGG AAGAGATATT TACACCTTTG ATGGAGCTCT AAACAAGTCC ACTGTCCCCA 301 CTGACTTTAG TAGTGCAAAA ATTGAAGTCT CACAATTACT AAAAGGAGAT GCCTCTTTGA 361 AGATGGATAA GAGTGATGCT GTCTCACACA CAGGAAACTA CACTTGTGAA GTAACAGAAT 421 TAACCAGAGA AGGTGAAACG ATCATCGAGC TAAAATATCG TGTTGTTTCA TGGTTTTCTC 481 CAAATGAAAA TATTCTTATT GTTATTTTCC CAATTTTTGC TATACTCCTG TTCTGGGGAC 541 AGTTTGGTAT TAAAACACTT AAATATAGAT CCGGTGGTAT GGATGAGAAA ACAATTGCTT 601 TACTTGTTGC TGGACTAGTG ATCACTGTCA TTGTCATTGT TGGAGCCATT CTTTTCGTCC 661 CAGGTGAATA TTCATTAAAG AATGCTACTG GCCTTGGTTT AATTGTGACT TCTACAGGGA 721 TATTAATATT ACTTCACTAC TATGTGTTTA GTACAGCGAT TGGATTAACC TCCTTCGTCA 781 TTGCCATATT GGTTATTCAG GTGATAGCCT ATATCCTCGC TGTGGTTGGA CTGAGTCTCT 841 GTATTGCGGC GTGTATACCA ATGCATGGCC CTCTTCTGAT TTCAGGTTTG AGTATCTTAG 901 CTCTAGCACA ATTACTTGGA CTAGTTTATA TGAAATTTGT GGCTTCCAAT CAGAAGACTA 961 TACAACCTCC TGGAATAACT GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca 1021 ttgcttatca atttgttgca acgaac