Construct: ORF ccsbBroadEn_13859
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010694.1_s300c1, BRDN0000391948
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FUT2 (2524)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2524 | FUT2 | fucosyltransferase 2 | NM_000511.6 | 44.2% | 44% | (many diffs) |
| 2 | human | 2524 | FUT2 | fucosyltransferase 2 | NM_001097638.3 | 44.2% | 44% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 525
- ORF length:
- 459
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGTCGTTCAG ATGCCTTTCT CCTTTCCCAT GGCCCACTTC ATCCTCTTTG 121 TCTTTACGGT TTCCACTATA TTTCACGTTC AGCAGCGGCT AGCGAAGATT CAAGCCATGT 181 GGGAGTTACC GGTGCAGATA CCAGTGCTAG CCTCAACATC AAAGGCACTG GGACCCAGCC 241 AGCTCAGGGG GATGTGGACG ATCAATGCGA TAGGCCGCCT GGGGAACCAG ATGGGCGAGT 301 ACGCCACACT GTATGCCCTG GCCAAGATGA ACGGGCGGCC CGCCTTCATC CCGGCCCAGA 361 TGCACAGCAC CCTGGCCCCC ATCTTCAGAA TCACCCTGCC GGTGCTGCAC AGCGCCACGG 421 CCAGCAGGAT CCCCTGGCAG AACTACCACC TGAACGACTG GATGGAGGAG GAATACCGCC 481 ACATCCCGGG GGAGTACGTC CGCTTCACCG GCTACCGCAG CTCCTACCCG ACTTTCTTGT 541 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c