Construct: ORF ccsbBroadEn_13879

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013387.1_s300c1, BRDN0000457476
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TNC (3371)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3371 TNC tenascin C XM_011518625.3 95.3% 8.1% (many diffs)
2 human 3371 TNC tenascin C XM_005251973.4 95% 8.9% (many diffs)
3 human 3371 TNC tenascin C XM_005251972.4 91.2% 7.8% (many diffs)
4 human 3371 TNC tenascin C XM_011518628.3 90.3% 9.4% (many diffs)
5 human 3371 TNC tenascin C XM_006717097.4 88.5% 7.8% (many diffs)
6 human 3371 TNC tenascin C XM_011518626.3 87.4% 8.5% (many diffs)
7 human 3371 TNC tenascin C NM_002160.4 87.4% 7.4% (many diffs)
8 human 3371 TNC tenascin C XM_011518629.3 87.1% 9.4% (many diffs)
9 human 3371 TNC tenascin C XM_006717098.4 86.8% 8.1% (many diffs)
10 human 3371 TNC tenascin C XM_006717101.4 85.6% 9.9% (many diffs)
11 human 3371 TNC tenascin C XM_005251974.4 84.8% 9.9% (many diffs)
12 human 3371 TNC tenascin C XM_017014681.2 84.5% 8.1% (many diffs)
13 human 3371 TNC tenascin C XM_017014680.2 83.9% 7.1% (many diffs)
14 human 3371 TNC tenascin C XM_006717096.4 83.9% 7.1% (many diffs)
15 human 3371 TNC tenascin C XM_017014679.2 82.1% 7.1% (many diffs)
16 human 3371 TNC tenascin C XM_005251975.4 80.9% 10.5% (many diffs)
17 human 3371 TNC tenascin C XM_017014678.2 80.7% 6.9% (many diffs)
18 human 3371 TNC tenascin C XM_024447530.1 80.7% 6.9% (many diffs)
19 mouse 21923 Tnc tenascin C XM_006537777.1 69.1% 9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
576
ORF length:
507
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGGGCCATG ACTCAGCTGT TGGCAGGTGT CTTTCTTGCT TTCCTTGCCC
121TCGCTACCGA AGGTGGGGTC CTCAAGAAAG TCATCCGGCA CAAGCGACAG AGTGGGGTGA
181ACGCCACCCT GCCAGAAGAG AACCAGCCAG TGGTGTTTAA CCACGTTTAC AACATCAAGC
241TGCCAGTGGG ATCCCAGTGT TCGGTGGATC TGGAGTCAGC CAGTGGGGAG AAAGACCTGG
301CACCGCCTTC AGAGCCCAGC GAAAGCTTTC AGGAGCACAC AGTGGATGGG GAAAACCAGA
361TTGTCTTCAC ACATCGCATC AACATCCCCC GCCGGGCCTG TGGCTGTGCC GCAGCCCCTG
421ATGTTAAGGA GCTGCTGAGC AGACTGGAGG AGCTGGAGAA CCTGGTGTCT TCCCTGAGGG
481AGCAATGTAC TGCAGGAGCA GGCTGCTGTC TCCAGCCTGC CACAGGCCGC TTGGACACCA
541GGCCCTTCTG TAGCGGTCGG GGCAGACTTC AGCACTGAAG GATGTGGCTG TGTCTGCGAA
601CCTGGCTGGA AAGGCCCCAA CTGCTCTGAG CCCGAATGTC CAGGCAACTG TCACCTTCGA
661GGCCGGTGCA TTGATGGGCA GTGCATCTGT GACGACGGCT TCACGGGCGA GGACTGCAGC
721CAGCTGGCTT GCCCCAGCGA CTGCAATGAC CAGGGCAAGT GCGTAAATGG AGTCTGCATC
781TGTTTCGAAG GCTACGCCGG GGCTGACTGC AGCCGTGAAA TCTGCCCAGT GCCCTGCAGT
841GAGGAGCACG GCACATGTGT AGATGGCTTG TGTGTGTGCC ACGATGGCTT TGCAGGCGAT
901GACTGCAACA AGCCTCTGTG TCTCAACAAT TGCTACAACC GTGGACGATG CGTGGAGAAT
961GAGTGCGTGT GTGATGAGGG TTTCACGGGC GAAGACTGCA GTGAGCTCAT CTGCCCCAAT
1021GACTGCTTCG ACCGGGGCCG CTGCATCAAT GGCACCTGCT ACTGCGAAGG CTTCACAGGT
1081GAAGACTGCG GGAAACCCAC CTGCCCACAT GCCTGCCACA CCCAGGGCCG GTGTGAGGAG
1141GGGCAGTGTG TATGTGATGA GGGCTTTGCC GGTGTGGACT GCAGCGAGAA GAGGTGTCCT
1201GCTGACTGTC ACAATCGTGG CCGCTGTGTA GACGGGCGGT GTGAGTGTGA TGATGGTTTC
1261ACTGGAGCTG ACTGTGGGGA GCTCAAGTGT CCCAATGGCT GCAGTGGCCA TGGCCGCTGT
1321GTCAATGGGC AGTGTGTGTG TGATGAGGGC TATACTGGGG AGGACTGCAG CCAGCTACGG
1381TGCCCCAATG ACTGTCACAG TCGGGGCCGC TGTGTCGAGG GCAAATGTGT ATGTGAGCAA
1441GGCTTCAAGG GCTATGACTG CAGTGACATG AGCTGCCCTA ATGACTGTCA CCAGCACGGC
1501CGCTGTGTGA ATGGCATGTG TGTTTGTGAT GACGGCTACA CAGGGGAAGA CTGCCGGGAT
1561CGCCAATGCC CCAGGGACTG CAGCAACAGG GGCCTCTGTG TGGACGGACA GTGCGTCTGT
1621GAGGACGGCT TCACCGGCCC TGACTGTGCA GAACTCTCCT GTCCAAATGA CTGCCATGGC
1681CGGGGTCGCT GTGTGAATGG GCAGTGCGTG TGCCATGAAG GATTTATGGG CAAAGACTGC
1741AAGGGGCAAA GATGTCCCAG TGACTGTCAT GGCCAGGGCC GCTGCGTGGA CGGCCAGTGC
1801ATCTGCCACG AGGGCTTCAC AGGCCTGGAC TGTGGCCAGC ACTCCTGCCC CAGTGACTGC
1861AACAACTTAG GACAATGCGT CTCGGGCCGC TGCATCTGCA ACGAGGGCTA CAGCGGAGAA
1921GACTGCTCAG AGGTGTCTCC TCCCAAAGAC CTCGTTGTGA CAGAAGTGAC GGAAGAGACG
1981GTCAACCTGG CCTGGGACAA TGAGATGCGG GTCACAGAGT ACCTTGTCGT GTACACGCCC
2041ACCCACGAGG GTGGTCTGGA AATGCAGTTC CGTGTGCCTG GGGACCAGAC GTCCACCATC
2101ATCCAGGAGC TGGAACCTGG TGTGGAGTAC TTTATCCGTG TATTTGCCAT CCTGGAGAAC
2161AAGAAGAGCA TTCCTGTCAG CGCCAGGGTG GCCACGTACT TACCTGCACC TGAAGGCCTG
2221AAATTCAAGT CCATCAAGGA GACATCTGTG GAAGTGGAGT GGGATCCTCT AGACATTGCT
2281TTTGAAACCT GGGAGATCAT CTTCCGGAAT ATGAATAAAG AAGATGAGGG AGAGATCACC
2341AAAAGCCTGA GGAGGCCAGA GACCTCTTAC CGGCAAACTG GTCTAGCTCC TGGGCAAGAG
2401TATGAGATAT CTCTGCACAT AGTGAAAAAC AATACCCGGG GCCCTGGCCT GAAGAGGGTG
2461ACCACCACAC GCTTGGATGC CCCCAGCCAG ATCGAGGTGA AAGATGTCAC AGACACCACT
2521GCCTTGATCA CCTGGTTCAA GCCCCTGGCT GAGATCGATG GCATTGAGCT GACCTACGGC
2581ATCAAAGACG TGCCAGGAGA CCGTACCACC ATCGATCTCA CAGAGGACGA GAACCAGTAC
2641TCCATCGGGA ACCTGAAGCC TGACACTGAG TACGAGGTGT CCCTCATCTC CCGCAGAGGT
2701GACATGTCAA GCAACCCAGC CAAAGAGACC TTCACAACAG GCCTCGATGC TCCCAGGAAT
2761CTTCGACGTG TTTCCCAGAC AGATAACAGC ATCACCCTGG AATGGAGGAA TGGCAAGGCA
2821GCTATTGACA GTTACAGAAT TAAGTATGCC CCCATCTCTG GAGGGGACCA CGCTGAGGTT
2881GATGTTCCAA AGAGCCAACA AGCCACAACC AAAACCACAC TCACAGGTCT GAGGCCGGGA
2941ACTGAATATG GGATTGGAGT TTCTGCTGTG AAGGAAGACA AGGAGAGCAA TCCAGCGACC
3001ATCAACGCAG CCACAGAGTT GGACACGCCC AAGGACCTTC AGGTTTCTGA AACTGCAGAG
3061ACCAGCCTGA CCCTGCTCTG GAAGACACCG TTGGCCAAAT TTGACCGCTA CCGCCTCAAT
3121TACAGTCTCC CCACAGGCCA GTGGGTGGGA GTGCAGCTTC CAAGAAACAC CACTTCCTAT
3181GTCCTGAGAG GCCTGGAACC AGGACAGGAG TACAATGTCC TCCTGACAGC CGAGAAAGGC
3241AGACACAAGA GCAAGCCCGC ACATGTGAAG GCATCCACTG AACAAGCCCC TGAGCTGGAA
3301AACCTCACCG TGACTGAGGT TGGCTGGGAT GGCCTCAGAC TCAACTGGAC CGCAGCTGAC
3361CAGGCCTATG AGCACTTTAT CATTCAGGTG CAGGAGGCCA ACAAGGTGGA GGCAGCTCGG
3421AACCTCACCG TGCCTGGCAG CCTTCGGGCT GTGGACATAC CGGGCCTCAA GGCTGCTACG
3481CCTTATACAG TCTCCATCTA TGGGGTGATC CAGGGCTATA GAACACCAGT GCTCTCTGCT
3541GAGGCCTCCA CAGGGGAAAC TCCCAATTTG GGAGAGGTCG TGGTGGCCGA GGTGGGCTGG
3601GATGCCCTCA AACTCAACTG GACTGCTCCA GAAGGGGCCT ATGAGTACTT TTTCATTCAG
3661GTGCAGGAGG CTGACACAGT AGAGGCAGCC CAGAACCTCA CCGTCCCAGG AGGACTGGGG
3721TCCACAGACC TGCCTGGGCT CAAAGCAGCC ACTCATTATA CCATCACCAT CCGCGGGGTC
3781ACTCAGGACT TCAGCACAAC CCCTCTCTCT GTTGGAGTCT TGACAGAGGA GGTTCCAGAT
3841ATGGGAAACC TCACAGTGAC CGAGGTTAGC TGGGATGCTC TCAGACTGAA CTGGACCACG
3901CCAGATGGAA CCTATGACCA GTTTACTATT CAGGTCCAGG AGGCTGACCA GGTGGAAGAG
3961GCTCACAATC TCACGGTTCC TGGCAGCCTG CGTTCCATGG AAATCCCAGG CCTCAGGGCT
4021GGCACTCCTT ACACAGTCAC CCTGCACGGC GAGGTCAGGG GCCACAGCAC TCGACCCCTT
4081GCTGTAGAGG TCGTCACAGA GGATCTCCCA CAGCTGGGAG ATTTAGCCGT GTCTGAGGTT
4141GGCTGGGATG GCCTCAGACT CAACTGGACC GCAGCTGACA ATGCCTATGA GCACTTTGTC
4201ATTCAGGTGC AGGAGGTCAA CAAAGTGGAG GCAGCCCAGA ACCTCACGTT GCCTGGCAGC
4261CTCAGGGCTG TGGACATCCC GGGCCTCGAG GCTGCCACGC CTTATAGAGT CTCCATCTAT
4321GGGGTGATCC GGGGCTATAG AACACCAGTA CTCTCTGCTG AGGCCTCCAC AGCCATGGGC
4381TCCCCAAAGG AAGTCATTTT CTCAGACATC ACTGAAAATT CGGCTACTGT CAGCTGGAGG
4441GCACCCACAG CCCAAGTGGA GAGCTTCCGG ATTACCTATG TGCCCATTAC AGGAGGTACA
4501CCCTCCATGG TAACTGTGGA CGGAACCAAG ACTCAGACCA GGCTGGTGAA ACTCATACCT
4561GGCGTGGAGT ACCTTGTCAG CATCATCGCC ATGAAGGGCT TTGAGGAAAG TGAACCTGTC
4621TCAGGGTCAT TCACCACAGC TCTGGATGGC CCATCTGGCC TGGTGACAGC CAACATCACT
4681GACTCAGAAG CCTTGGCCAG GTGGCAGCCA GCCATTGCCA CTGTGGACAG TTATGTCATC
4741TCCTACACAG GCGAGAAAGT GCCAGAAATT ACACGCACGG TGTCCGGGAA CACAGTGGAG
4801TATGCTCTGA CCGACCTCGA GCCTGCCACG GAATACACAC TGAGAATCTT TGCAGAGAAA
4861GGGCCCCAGA AGAGCTCAAC CATCACTGCC AAGTTCACAA CAGACCTCGA TTCTCCAAGA
4921GACTTGACTG CTACTGAGGT TCAGTCGGAA ACTGCCCTCC TTACCTGGCG ACCCCCCCGG
4981GCATCAGTCA CCGGTTACCT GCTGGTCTAT GAATCAGTGG ATGGCACAGT CAAGGAAGTC
5041ATTGTGGGTC CAGATACCAC CTCCTACAGC CTGGCAGACC TGAGCCCATC CACCCACTAC
5101ACAGCCAAGA TCCAGGCACT CAATGGGCCC CTGAGGAGCA ATATGATCCA GACCATCTTC
5161ACCACAATTG GACTCCTGTA CCCCTTCCCC AAGGACTGCT CCCAAGCAAT GCTGAATGGA
5221GACACGACCT CTGGCCTCTA CACCATTTAT CTGAATGGTG ATAAGGCTCA GGCGCTGGAA
5281GTCTTCTGTG ACATGACCTC TGATGGGGGT GGATGGATTG TGTTCCTGAG ACGCAAAAAC
5341GGACGCGAGA ACTTCTACCA AAACTGGAAG GCATATGCTG CTGGATTTGG GGACCGCAGA
5401GAAGAATTCT GGCTTGGGCT GGACAACCTG AACAAAATCA CAGCCCAGGG GCAGTACGAG
5461CTCCGGGTGG ACCTGCGGGA CCATGGGGAG ACAGCCTTTG CTGTCTATGA CAAGTTCAGC
5521GTGGGAGATG CCAAGACTCG CTACAAGCTG AAGGTGGAGG GGTACAGTGG GACAGCAGGT
5581GACTCCATGG CCTACCACAA TGGCAGATCC TTCTCCACCT TTGACAAGGA CACAGATTCA
5641GCCATCACCA ACTGTGCTCT GTCCTACAAA GGGGCTTTCT GGTACAGGAA CTGTCACCGT
5701GTCAACCTGA TGGGGAGATA TGGGGACAAT AACCACAGTC AGGGCGTTAA CTGGTTCCAC
5761TGGAAGGGCC ACGAACACTC AATCCAGTTT GCTGAGATGA AGCTGAGACC AAGCAACTTC
5821AGAAATCTTG AAGGCAGGCG CAAACGGGCA TTGCCAACTT TCTTGTACAA AGTTGGcatt
5881ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)