Construct: ORF ccsbBroadEn_13970

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004106.1_s300c1, BRDN0000457305
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TMF1 (7110)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7110 TMF1 TATA element modulatory fac... NM_007114.3 99.9% 54.2% 1242C>T;1777_1778insA
2 human 7110 TMF1 TATA element modulatory fac... NM_001363879.1 99.6% 54.1% 1242C>T;1348_1356delGTAACTCTA;1786_1787insA
3 mouse 232286 Tmf1 TATA element modulatory fac... NM_001081111.2 85.5% 45.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1860
ORF length:
1791
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGTTGGTTC AACGCCTCCC AGCTCTCCAG CTTCGCTAAG CAGGCCCTGT
121CCCAGGCCCA GAAGTCTATT GACAGGGTTC TGGACATCCA GGAAGAGGAG CCGAGCATCT
181GGGCCGAGAC CATTCCGTAT GGAGAGCCGG GAATAAGTTC CCCTGTCAGT GGAGGATGGG
241ATACTTCAAC CTGGGGGTTG AAATCAAACA CTGAACCTCA GAGTCCACCA ATAGCCTCTC
301CTAAAGCAAT CACAAAGCCA GTTCGGAGGA CTGTGGTCGA TGAATCTGAA AATTTCTTCA
361GTGCCTTTCT CTCGCCAACT GATGTCCAGA CCATTCAGAA GAGTCCAGTG GTATCAAAAC
421CTCCAGCAAA ATCACAACGA CCAGAAGAAG AAGTGAAAAG CAGCTTACAT GAATCCTTGC
481ACATTGGCCA GTCAAGAACT CCTGAAACAA CTGAATCACA AGTAAAAGAC TCTTCTTTGT
541GTGTTTCAGG GGAAACTCTG GCAGCAGGTA CTTCATCACC TAAAACTGAA GGCAAGCACG
601AAGAAACTGT TAATAAAGAA TCGGATATGA AGGTGCCAAC TGTAAGTTTG AAAGTATCTG
661AAAGTGTAAT TGATGTGAAA ACAACTATGG AAAGTATATC TAATACGTCT ACGCAGTCTC
721TCACAGCAGA AACAAAGGAC ATAGCTTTGG AACCTAAGGA ACAAAAACAT GAAGACAGGC
781AGAGCAATAC ACCTTCTCCT CCTGTTAGTA CCTTTTCATC AGGTACTTCT ACCACCAGTG
841ATATTGAAGT TTTAGATCAT GAAAGTGTAA TAAGTGAGAG CTCAGCGAGC TCGAGACAAG
901AGACTACAGA TTCAAAATCA AGTCTTCACT TGATGCAGAC ATCTTTTCAG CTTCTCTCTG
961CATCTGCTTG TCCTGAATAT AATCGTTTAG ATGATTTCCA AAAACTCACT GAGAGTTGCT
1021GTTCATCTGA TGCTTTTGAA AGAATAGACT CATTTAGTGT ACAGTCATTA GATAGCCGGA
1081GTGTAAGTGA AATCAATTCA GATGATGAAT TGTCAGGCAA GGGATATGCT TTAGTGCCTA
1141TTATAGTTAA TTCTTCAACT CCAAAGTCTA AAACAGTTGA ATCTGCTGAA GGAAAATCTG
1201AAGAAGTAAA TGAAACATTA GTTATACCCA CTGAGGAAGC AGAAATGGAA GAAAGTGGAC
1261GAAGTGCAAC TCCTGTTAAC TGTGAACAGC CTGATATCTT GGTTTCTTCT ACACCAATAA
1321ATGAAGGACA GACTGTGTTA GACAAGGTGG CTGAGCAGTG TGAACCTGCT GAAAGTCAGC
1381CAGAAGCACT TTCTGAGAAG GAAGATGTTT GCAAGACAGT TGAATTTCTG AATGAAAAGC
1441TGGAAAAAAG GGAGGCTCAG TTATTATCTC TTAGTAAGGA AAAAGCACTT CTAGAAGAAG
1501CTTTTGATAA CCTGAAAGAT GAAATGTTCA GAGTGAAAGA AGAAAGCAGT AGCATTTCTT
1561CCTTGAAAGA TGAGTTTACT CAAAGAATTG CAGAAGCAGA AAAGAAAGTT CAACTAGCCT
1621GCAAAGAGAG AGATGCTGCT AAAAAGGAAA TCAAAAACAT AAAAGAAGAA CTTGCCACTA
1681GATTAAATAG TAGTGAAACT GCAGACCTTT TGAAAGAGAA AGATGAGCAG ATCCGAGGGT
1741TAATGGAAGA AGGAGAAAAA CTTTCAAAAC AGCAGCTGCA CAATTCTAAC ATCATCAAGA
1801AATTAAGAGC TAAAGACAAG GAGAATGAAA ATATGGTTGC AAAGCATGAA CAAAAAAGTT
1861AAAGAGCTAG AAGAGGAGTT GCAGCATTTG AAACAGGTCC TTGATGGCAA AGAAGAGGTT
1921GAGAAACAAC ATAGAGAAAA TATTAAAAAA CTAAATTCCA TGGTAGAACG CCAAGAGAAA
1981GATCTTGGCC GTCTTCAGGT AGACATGGAT GAACTTGAAG AAAAGAACCG AAGTATTCAG
2041GCTGCCCTGG ATAGTGCATA CAAAGAACTT ACTGATCTTC ACAAAGCCAA TGCTGCAAAG
2101GATAGTGAGG CACAGGAAGC TGCTCTGAGC CGTGAAATGA AAGCTAAAGA AGAACTTTCT
2161GCAGCATTAG AGAAGGCCCA AGAAGAAGCC CGTCAGCAGC AAGAAACATT AGCCATTCAA
2221GTGGGGGACC TTAGGCTTGC ATTGCAGCGT ACAGAACAAG CGGCTGCCAG AAAGGAGGAT
2281TATTTACGCC ATGAGATCGG TGAACTTCAG CAGAGACTCC AGGAAGCAGA GAATCGAAAC
2341CAGGAACTGA GTCAAAGTGT TTCATCAACA ACAAGACCAT TGCTTCGACA AATAGAAAAT
2401TTGCAAGCAA CCCTGGGATC CCAGACATCG TCGTGGGAGA AATTAGAGAA GAATCTTTCT
2461GATAGGCTTG GTGAATCCCA GACCTTGCTG GCAGCAGCAG TTGAGAGAGA ACGTGCAGCT
2521ACAGAAGAAC TCCTTGCTAA CAAAATTCAG ATGTCTTCCA TGGAGTCACA GAATTCTCTT
2581TTAAGACAGG AAAACAGTAG ATTTCAAGCC CAGCTAGAAT CAGAGAAAAA TAGGCTGTGT
2641AAACTGGAGG ATGAGAACAA TAGGTACCAG GTTGAATTGG AAAACCTAAA AGATGAATAT
2701GTAAGAACAC TTGAAGAGAC GAGGAAAGAA AAGACATTGT TGAATAGTCA GTTAGAAATG
2761GAAAGAATGA AAGTTGAACA AGAAAGGAAG AAAGCCATTT TTACTCAAGA AACAATAAAA
2821GAAAAGGAAC GCAAGCCATT TTCTGTTTCT AGCACTCCCA CCATGTCACG CTCAAGTTCA
2881ATAAGTGGTG TTGATATGGC AGGACTACAG ACATCTTTTC TGTCTCAGGA TGAGTCTCAT
2941GATCACTCAT TTGGACCAAT GCCTATATCA GCAAATGGAA GCAATCTTTA TGATGCTGTA
3001AGGATGGGAG CAGGATCAAG CATAATTGAA AACCTACAGT CTCAGCTAAA GCTAAGGGAA
3061GGGGAAATCA CTCATTTACA GCTAGAAATT GGCAATCTAG AAAAAACTCG ATCAATAATG
3121GCTGAAGAAC TAGTTAAATT AACAAATCAA AATGATGAAC TTGAAGAGAA GGTGAAGGAG
3181ATACCCAAAC TTAGAACTCA GCTAAGAGAT TTGGATCAAA GGTACAACAC TATTCTGCAG
3241ATGTATGGAG AAAAAGCAGA AGAGGCAGAA GAACTTCGAT TAGATCTCGA AGATGTAAAA
3301AATATGTACA AAACTCAAAT AGATGAACTT TTAAGACAAA GTCTCAGTTT GCCAACTTTC
3361TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)