Construct: ORF ccsbBroadEn_13985
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003424.1_s300c1, BRDN0000387163
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF200 (7752)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_001145446.2 | 99.6% | 1.5% | 1_3delATG;12delA |
| 2 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_001145447.2 | 99.6% | 1.5% | 1_3delATG;12delA |
| 3 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_001145448.2 | 99.6% | 1.5% | 1_3delATG;12delA |
| 4 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_003454.4 | 99.4% | 1.5% | 1_3delATG;12delA;466_468delGCA |
| 5 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_198088.3 | 99.4% | 1.5% | 1_3delATG;12delA;466_468delGCA |
| 6 | human | 7752 | ZNF200 | zinc finger protein 200 | XM_005255556.1 | 99.4% | 1.5% | 1_3delATG;12delA;466_468delGCA |
| 7 | human | 7752 | ZNF200 | zinc finger protein 200 | XM_006720941.2 | 99.4% | 1.5% | 1_3delATG;12delA;466_468delGCA |
| 8 | human | 7752 | ZNF200 | zinc finger protein 200 | NM_198087.3 | 99.1% | 1.5% | (many diffs) |
| 9 | human | 7752 | ZNF200 | zinc finger protein 200 | XM_017023648.1 | 41.1% | 3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 117
- ORF length:
- 51
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGCAAAGTGG TTCCTATGCC CCCAAAGCCA AAGCAGTCCT TTATACTGAG 121 AGTTCCGCCA GACTCCAAGC TGGGCCAAGA CCTACTTCGA GATGCCACTA ACGGGCCCAA 181 GACCATCCAC CAGCTAGTGC TGGAGCACTT CCTCACCTTC TTGCCCAAGC CAAGCCTGGT 241 CCAGCCCAGT CAGAAAGTCA AGGAGACCTT GGTTATTATG AAAGATGTGA GCTCAAGCCT 301 TCAGAACAGA GTGCATCCTC GTCCCTTGGT GAAGCTTCTG CCCAAAGGAG TCCAAAAGGA 361 ACAAGAGACA GTGTCTCTGT ATTTGAAAGC TAACCCTGAG GAGCTGGTGG TCTTTGAGGA 421 TTTGAATGTA TTTCACTGCC AGGAAGAATG TGTGAGCTTG GATCCTACTC AACAACTCAC 481 GTCAGAGAAG GAAGATGACA GCAGTGTCGG GGAAATGATG TTACTGGTCA ATGGCAGTAA 541 TCCTGAAGGT GAAGATCCTG AGAGGGAACC TGTAGAAAAT GAAGATTATA GAGAAAAGTC 601 TTCAGATGAT GATGAAATGG ATTCTTCCTT GGTCTCTCAG CAGCCTCCCG ATAACCAGGA 661 AAAGGAACGA CTAAATACAT CCATTCCACA AAAAAGGAAA ATGAGAAATC TGTTAGTTAC 721 CATTGAGAAT GATACTCCTC TAGAGGAACT CTCAAAATAT GTAGACATCA GTATTATTGC 781 CCTTACTCGA AATCGGAGGA CAAGGAGATG GTACACTTGT CCACTGTGTG GGAAACAGTT 841 TAATGAAAGT TCTTACCTCA TTTCCCACCA GAGGACCCAC ACTGGAGAAA AACCCTATGA 901 CTGTAATCAC TGTGGGAAAA GCTTCAATCA TAAAACAAAC CTCAATAAAC ATGAGCGAAT 961 TCATACAGGA GAGAAACCTT ATTCCTGTTC TCAGTGTGGA AAAAACTTCC GTCAGAATTC 1021 TCATCGGAGT CGTCATGAAG GAATCCATAT AAGGGAGAAG ATATTTAAGT GTCCAGAATG 1081 TGGGAAAACC TTCCCAAAGA ATGAGGAGTT TGTGCTTCAT CTGCAGAGTC ATGAGGCTGA 1141 GAGACCATAT GGTTGCAAAA AATGTGGGAG AAGATTTGGT CGGCTGTCAA ACTGTACCCG 1201 GCATGAGAAA ACCCACTCAG CCTGTAAGAC CCGAAAGCAG AAGTACCCAA CTTTCTTGTA 1261 CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac