Construct: ORF ccsbBroadEn_14002
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017100.1_s300c1, BRDN0000385000
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX3 (8724)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8724 | SNX3 | sorting nexin 3 | NM_001300928.2 | 83.1% | 77.1% | (many diffs) |
| 2 | human | 8724 | SNX3 | sorting nexin 3 | NM_003795.6 | 64.5% | 54.1% | (many diffs) |
| 3 | human | 8724 | SNX3 | sorting nexin 3 | NM_001300929.2 | 51.1% | 41.1% | (many diffs) |
| 4 | mouse | 54198 | Snx3 | sorting nexin 3 | NM_017472.4 | 61.8% | 54.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 405
- ORF length:
- 339
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGACATGGC GGAGACCGTG GCTGACACCC GGCGGCTGAT CACCAAGCCG CAGAACCTGA 121 ATGACGCCTA CGGACCCCCC AGCAACTTCC TCGAGATCGA TGTGAGCAAC CCGCAAACGG 181 TGGGGGTCGG CCGGGGCCGC TTCACCACTT ACGAAATCAG GGTCAAGACA AATCTTCCTA 241 TTTTCAAGCT GAAAGAATCT ACTGTTAGAA GAAGATACAG TGACTTTGAA TGGCTGCGAA 301 GTGAATTAGA AAGAGAGAGC AAGCCCTGCC TCAGAATGAC ATCAGAGGCA AGGAGTCATG 361 GAAGGACGTG GTGTGCTCAG AATGCTGAAA AGTTATTTTC TGACTACCCA ACTTTCTTGT 421 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c