Construct: ORF ccsbBroadEn_14011

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006650.1_s300c1, BRDN0000393652
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAPSS1 (9061)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9061 PAPSS1 3'-phosphoadenosine 5'-phos... XM_011532400.2 99.9% 99.8% 14C>A
2 human 9061 PAPSS1 3'-phosphoadenosine 5'-phos... XM_011532401.1 99.9% 99.8% 14C>A
3 human 9061 PAPSS1 3'-phosphoadenosine 5'-phos... NM_005443.5 96.5% 96.4% 1_63del;77C>A
4 mouse 23971 Papss1 3'-phosphoadenosine 5'-phos... NM_001289477.1 87.7% 98.5% (many diffs)
5 mouse 23971 Papss1 3'-phosphoadenosine 5'-phos... NM_001289478.1 87.7% 98.5% (many diffs)
6 mouse 23971 Papss1 3'-phosphoadenosine 5'-phos... NM_011863.2 84.8% 95.1% (many diffs)
7 mouse 23971 Papss1 3'-phosphoadenosine 5'-phos... NM_001289479.1 80.5% 90.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1875
ORF length:
1809
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GAGAGCAAAC AATGTCACCT ACCAAGCCCA TCATGTCAGC AGGAACAAGA
121GAGGTCAGGT GGTGGGGACC AGAGGTGGCT TTCGTGGTTG CACAGTTTGG CTAACAGGCT
181TGTCTGGAGC GGGAAAGACT ACTGTGAGCA TGGCCTTGGA GGAGTACCTG GTTTGTCATG
241GTATTCCATG CTACACTCTG GATGGTGACA ATATTCGTCA AGGTCTCAAT AAAAATCTTG
301GCTTTAGTCC TGAAGACAGA GAAGAGAATG TTCGACGCAT CGCAGAAGTT GCTAAACTGT
361TTGCAGATGC TGGCTTAGTG TGCATCACAA GTTTCATATC ACCTTACACT CAGGATCGCA
421ACAATGCAAG GCAAATTCAT GAAGGTGCAA GTTTACCGTT TTTTGAAGTA TTTGTTGATG
481CTCCTCTGCA TGTTTGTGAA CAGAGGGATG TCAAAGGACT CTACAAAAAA GCCCGGGCAG
541GAGAAATTAA AGGTTTCACT GGGATCGATT CTGAATATGA AAAGCCAGAG GCCCCTGAGT
601TGGTGCTGAA AACAGACTCC TGTGATGTAA ATGACTGTGT CCAGCAAGTT GTGGAACTTC
661TACAGGAACG GGATATTGTA CCTGTGGATG CATCTTATGA AGTAAAAGAA CTATATGTGC
721CAGAAAATAA ACTTCATTTG GCAAAAACAG ATGCGGAAAC ATTACCAGCA CTGAAAATTA
781ATAAAGTGGA TATGCAGTGG GTGCAGGTTT TGGCAGAAGG TTGGGCAACC CCATTGAATG
841GCTTTATGAG AGAGAGGGAG TACTTGCAGT GCCTTCATTT TGATTGTCTT CTGGATGGAG
901GTGTCATTAA CTTGTCAGTA CCTATAGTTC TGACTGCGAC TCATGAAGAT AAAGAGAGGC
961TGGACGGCTG TACAGCATTT GCTCTGATGT ATGAGGGCCG CCGTGTGGCC ATTCTTCGCA
1021ATCCAGAGTT TTTTGAGCAC AGGAAAGAGG AGCGCTGTGC CAGACAGTGG GGAACGACAT
1081GCAAGAACCA CCCCTATATT AAGATGGTGA TGGAACAAGG AGATTGGCTG ATTGGAGGAG
1141ATCTTCAAGT CTTGGATCGA GTTTATTGGA ATGATGGTCT TGATCAGTAT CGTCTTACTC
1201CTACTGAGCT AAAGCAGAAA TTTAAAGATA TGAATGCTGA TGCTGTCTTT GCATTTCAAC
1261TACGCAACCC AGTGCACAAT GGACATGCCC TGTTAATGCA GGATACCCAT AAGCAACTTC
1321TAGAGAGGGG CTACCGGCGC CCTGTCCTCC TCCTCCACCC TCTGGGTGGC TGGACAAAGG
1381ATGACGATGT TCCTTTGATG TGGCGTATGA AGCAGCATGC TGCAGTGTTG GAGGAAGGAG
1441TTCTGAATCC TGAGACGACA GTGGTGGCCA TCTTCCCATC TCCCATGATG TATGCTGGAC
1501CAACTGAGGT CCAGTGGCAT TGCAGAGCAC GGATGGTTGC AGGAGCCAAC TTTTACATTG
1561TTGGACGAGA CCCTGCTGGC ATGCCTCATC CAGAAACAGG GAAGGATCTT TATGAGCCAA
1621GTCATGGTGC CAAAGTGCTG ACGATGGCCC CTGGTTTAAT CACTTTGGAA ATAGTTCCCT
1681TTCGAGTTGC AGCTTACAAC AAGAAAAAGA AGCGTATGGA CTACTATGAC TCTGAACACC
1741ATGAAGACTT TGAATTTATT TCAGGAACAC GAATGCGCAA ACTTGCTCGA GAAGGCCAGA
1801AACCACCTGA AGGTTTCATG GCTCCCAAGG CTTGGACCGT GCTGACAGAA TACTACAAAT
1861CCTTGGAGAA AGCTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1921tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)