Construct: ORF ccsbBroadEn_14037

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010120.1_s300c1, BRDN0000388339
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSPAN32 (10077)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10077 TSPAN32 tetraspanin 32 NM_139022.2 80.4% 69.4% (many diffs)
2 human 10077 TSPAN32 tetraspanin 32 XM_011519822.1 73.4% 67.1% (many diffs)
3 human 10077 TSPAN32 tetraspanin 32 XM_011519818.3 72.7% 61.7% (many diffs)
4 human 10077 TSPAN32 tetraspanin 32 XM_005252720.4 71.7% 64% (many diffs)
5 human 10077 TSPAN32 tetraspanin 32 XM_005252719.4 68% 57.2% (many diffs)
6 human 10077 TSPAN32 tetraspanin 32 XM_011519815.3 67.8% 55.8% (many diffs)
7 human 10077 TSPAN32 tetraspanin 32 XM_011519819.1 66.2% 54.4% (many diffs)
8 human 10077 TSPAN32 tetraspanin 32 XM_017017067.1 66.2% 54.4% (many diffs)
9 human 10077 TSPAN32 tetraspanin 32 XM_017017065.1 55.8% 31.1% (many diffs)
10 human 10077 TSPAN32 tetraspanin 32 XM_017017064.1 52.7% 28.4% (many diffs)
11 human 10077 TSPAN32 tetraspanin 32 XM_011519829.3 52.4% 44.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
840
ORF length:
774
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCCTTGGAGT CGAGTCAGGG TTGCCAAATG CCAGATGCTG GTCACCTGCT
121TCTTTATCTT GCTGCTGGGC CTCTCTGTGG CCACCATGGT GACTCTTACC TACTTCGGGG
181CCCACTTTGC TGTCATCCGC CGAGCGTCCC TGGAGAAGAA CCCGTACCAG GCTGTGCACC
241AATGGGCCTT CTCTGCGGGG TTGAGCCTGG TGGGCCTCCT GACTCTGGGA GCCGTGCTGA
301GCGCTGCAGC CACCGTGAGG GAGGCCCAGG GCCTCATGGC AGGGGGCTTC CTGTGCTTCT
361CCCTGGCGTT CTGTGCACAG GTGCAGGTGG TGTTCTGGAG ACTCCACAGC CCCACCCAGG
421TGGAGGACGC CATGCTGGAC ACCTACGACC TGGTATATGA GCAGGCGATG AAAGGTACGT
481CCCACGTCCG GCGGCAGGAG CTGGCGGCCA TCCAGGACGT GTTTCTGTGC TGTGGGAAGA
541AGTCTCCTTT CAGCCGTCTG GGGAGCACAG AGGCTGACCT GTGTCAGGGA GAGGAGGCGG
601CGAGAGAGGA CTGCCTTCAG GGCATCCGGA GCTTCCTGAG GACACACCAG CAGGTCGCCT
661CCAGCCTGAC CAGCATCGGC CTGGCCCTCA CGCTTGGACC GCAAGGGCAA ATACACCCTG
721ACCCCACGAG CATGTGGCCG CCAGCCCCAG GAGCCCAGCC TCTTGAGATG CTCCCAGGGT
781GGACCCACAC ATTGTCTCCA CTCCGAAGCA GTTGCTATTG GTCCAAGAGG ATACTCGGGT
841ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
901acgaac

Download FASTA (ORF) (Full)