Construct: ORF ccsbBroadEn_14047

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007738.1_s300c1, BRDN0000457175
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TACC3 (10460)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10460 TACC3 transforming acidic coiled-... NM_006342.3 99.9% 99.7% 1689C>T;2508delG
2 human 10460 TACC3 transforming acidic coiled-... XM_017007653.1 99.9% 99.7% 1689C>T;2508delG
3 human 10460 TACC3 transforming acidic coiled-... XM_005247929.3 99.4% 99.2% 1689C>T;1941_1952del;2520delG
4 human 10460 TACC3 transforming acidic coiled-... XM_011513386.3 84.1% 81.6% (many diffs)
5 human 10460 TACC3 transforming acidic coiled-... XM_005247930.3 56.6% 56.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2583
ORF length:
2514
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGTCTGCAG GTCTTAAACG ACAAAAATGT CAGCAATGAA AAAAATACAG
121AAAATTGCGA CTTCCTGTTT TCGCCACCAG AAGTTACCGG AAGATCGTCT GTTCTTCGTG
181TGTCACAGAA AGAAAATGTG CCACCCAAGA ACCTGGCCAA AGCTATGAAG GTGACTTTTC
241AGACACCTCT GCGGGATCCA CAGACGCACA GGATTCTAAG TCCTAGCATG GCCAGCAAAC
301TTGAGGCTCC TTTCACTCAG GATGACACCC TTGGACTGGA AAACTCACAC CCGGTCTGGA
361CACAGAAAGA GAACCAACAG CTCATCAAGG AAGTGGATGC CAAAACTACT CATGGAATTC
421TACAGAAACC AGTGGAGGCT GACACCGACC TCCTGGGGGA TGCAAGCCCA GCCTTTGGGA
481GTGGCAGCTC CAGCGAGTCT GGCCCAGGTG CCCTGGCTGA CCTGGACTGC TCAAGCTCTT
541CCCAGAGCCC AGGAAGTTCT GAGAACCAAA TGGTGTCTCC AGGAAAAGTG TCTGGCAGCC
601CTGAGCAAGC CGTGGAGGAA AACCTTAGTT CCTATTCCTT AGACAGAAGA GTGACACCCG
661CCTCTGAGAC CCTAGAAGAC CCTTGCAGGA CAGAGTCCCA GCACAAAGCG GAGACTCCGC
721ACGGAGCCGA GGAAGAATGC AAAGCGGAGA CTCCGCACGG AGCCGAGGAG GAATGCCGGC
781ACGGTGGGGT CTGTGCTCCC GCAGCAGTGG CCACTTCGCC TCCTGGTGCA ATCCCTAAGG
841AAGCCTGCGG AGGAGCACCC CTGCAGGGTC TGCCTGGCGA AGCCCTGGGC TGCCCTGCGG
901GTGTGGGCAC CCCCGTGCCA GCAGATGGCA CTCAGACCCT TACCTGTGCA CACACCTCTG
961CTCCTGAGAG CACAGCCCCA ACCAACCACC TGGTGGCTGG CAGGGCCATG ACCCTGAGTC
1021CTCAGGAAGA AGTGGCTGCA GGCCAAATGG CCAGCTCCTC GAGGAGCGGA CCTGTAAAAC
1081TAGAATTTGA TGTATCTGAT GGCGCCACCA GCAAAAGGGC ACCCCCACCA AGGAGACTGG
1141GAGAGAGGTC CGGCCTCAAG CCTCCCTTGA GGAAAGCAGC AGTGAGGCAG CAAAAGGCCC
1201CGCAGGAGGT GGAGGAGGAC GACGGTAGGA GCGGAGCAGG AGAGGACCCC CCCATGCCAG
1261CTTCTCGGGG CTCTTACCAC CTCGACTGGG ACAAAATGGA TGACCCAAAC TTCATCCCGT
1321TCGGAGGTGA CACCAAGTCT GGTTGCAGTG AGGCCCAGCC CCCAGAAAGC CCTGAGACCA
1381GGCTGGGCCA GCCAGCGGCT GAACAGTTGC ATGCTGGGCC TGCCACGGAG GAGCCAGGTC
1441CCTGTCTGAG CCAGCAGCTG CATTCAGCCT CAGCGGAGGA CACGCCTGTG GTGCAGTTGG
1501CAGCCGAGAC CCCAACAGCA GAGAGCAAGG AGAGAGCCTT GAACTCTGCC AGCACCTCGC
1561TTCCCACAAG CTGTCCAGGC AGTGAGCCAG TGCCCACCCA TCAGCAGGGG CAGCCTGCCT
1621TGGAGCTGAA AGAGGAGAGC TTCAGAGACC CCGCTGAGGT TCTAGGCACG GGCGCGGAGG
1681TGGATTACCT GGAGCAGTTT GGAACTTCCT CGTTTAAGGA GTCGGCCTTG AGGAAGCAGT
1741CCTTATACCT CAAGTTTGAC CCCCTCCTGA GGGACAGTCC TGGTAGACCA GTGCCCGTGG
1801CCACCGAGAC CAGCAGCATG CACGGTGCAA ATGAGACTCC CTCAGGACGT CCGCGGGAAG
1861CCAAGCTTGT GGAGTTCGAT TTCTTGGGAG CACTGGACAT TCCTGTGCCA GGCCCACCCC
1921CAGGTGTTCC CGCGCCTGGG GGCCCACCCC TGTCCACCGG ACCTATAGTG GACCTGCTCC
1981AGTACAGCCA GAAGGACCTG GATGCAGTGG TAAAGGCGAC ACAGGAGGAG AACCGGGAGC
2041TGAGGAGCAG GTGTGAGGAG CTCCACGGGA AGAACCTGGA ACTGGGGAAG ATCATGGACA
2101GGTTCGAAGA GGTTGTGTAC CAGGCCATGG AGGAAGTTCA GAAGCAGAAG GAACTTTCCA
2161AAGCTGAAAT CCAGAAAGTT CTAAAAGAAA AAGACCAACT TACCACAGAT CTGAACTCCA
2221TGGAGAAGTC CTTCTCCGAC CTCTTCAAGC GTTTTGAGAA ACAGAAAGAG GTGATCGAGG
2281GCTACCGCAA GAACGAAGAG TCACTGAAGA AGTGCGTGGA GGATTACCTG GCAAGGATCA
2341CCCAGGAGGG CCAGAGGTAC CAAGCCCTGA AGGCCCACGC GGAGGAGAAG CTGCAGCTGG
2401CAAACGAGGA GATCGCCCAG GTCCGGAGCA AGGCCCAGGC GGAAGCGTTG GCCCTCCAGG
2461CCAGCCTGAG GAAGGAGCAG ATGCGCATCC AGTCGCTGGA GAAGACAGTG GAGCAGAAGA
2521CTAAAGAGAA CGAGGAGCTG ACCAGGATCT GCGACGACCT CATCTCCAAG ATGGAAAGAT
2581CTTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat caatttgttg
2641caacgaac

Download FASTA (ORF) (Full)

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