Construct: ORF ccsbBroadEn_14088
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016254.1_s300c1, BRDN0000396040
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RIMBP2 (23504)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351233.1 | 99.8% | 99.8% | 4A>T;855G>A |
| 2 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351232.2 | 85.1% | 85% | (many diffs) |
| 3 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538107.3 | 73.6% | 73.6% | 1_690del;694A>T;1545G>A |
| 4 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538108.3 | 73.4% | 73.2% | (many diffs) |
| 5 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_015347.5 | 61.1% | 60.9% | (many diffs) |
| 6 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351231.2 | 60.2% | 60% | (many diffs) |
| 7 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351229.2 | 60.1% | 59.9% | (many diffs) |
| 8 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351230.2 | 60.1% | 59.9% | (many diffs) |
| 9 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351226.2 | 57.2% | 57% | (many diffs) |
| 10 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351227.2 | 57.2% | 57% | (many diffs) |
| 11 | human | 23504 | RIMBP2 | RIMS binding protein 2 | NM_001351228.2 | 57.2% | 57% | (many diffs) |
| 12 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538106.3 | 54% | 53.8% | (many diffs) |
| 13 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_017019106.2 | 54% | 53.8% | (many diffs) |
| 14 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538105.3 | 51.6% | 51.5% | (many diffs) |
| 15 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538102.2 | 47.2% | 47% | (many diffs) |
| 16 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538104.3 | 47.2% | 47% | (many diffs) |
| 17 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_017019105.2 | 47.2% | 47% | (many diffs) |
| 18 | human | 23504 | RIMBP2 | RIMS binding protein 2 | XM_011538103.3 | 44.9% | 44.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2001
- ORF length:
- 1935
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA TGGCCTAGCC ACCTCCCTCG GCAAAGGTCA GGAGAGCGCT ATTGGAGGCA 121 GCTCTGCGAT CGGTGAATAT ATCCGGCCCC TTCCGCAGCC TGGTGACAGG CCGGAGCCTC 181 TGTCCGCCAA GCCCACCTTC CTGTCGAGAT CCGGTAGCGC AAGATGCAGA TCTGAGTCAG 241 ACATGGAGAA TGAACGGAAT TCCAATACCT CCAAGCAGAG ATACTCGGGG AAGGTCCACC 301 TCTGTGTTGC CCGCTATAGT TACAACCCCT TCGATGGACC GAACGAGAAC CCCGAAGCTG 361 AGCTGCCCCT CACGGCGGGA AAATACCTCT ACGTCTATGG AGACATGGAT GAGGATGGGT 421 TCTATGAAGG AGAGCTCCTC GATGGCCAGA GGGGTCTGGT GCCCTCCAAC TTCGTGGACT 481 TTGTGCAGGA CAACGAGTCG CGGTTGGCAA GCACGCTGGG GAACGAGCAG GATCAGAACT 541 TCATCAACCA TTCCGGCATC GGCCTGGAGG GAGAGCACAT CCTGGACCTC CACTCCCCAA 601 CCCACATAGA TGCGGGCATC ACCGACAACA GTGCCGGGAC CCTGGACGTG AACATCGACG 661 ACATCGGAGA AGACATCGTG CCTTACCCTA GAAAAATCAC CCTCATCAAA CAACTCGCCA 721 AAAGTGTTAT TGTGGGCTGG GAGCCCCCGG CGGTGCCACC AGGATGGGGA ACGGTGAGCA 781 GCTACAACGT CCTGGTGGAC AAGGAGACAC GCATGAACCT CACGCTGGGG AGCAGAACTA 841 AAGCCCTCAT CGAGAAGCTC AACATGGCAG CCTGCACCTA CCGCATCTCC GTGCAGTGCG 901 TCACCAGCAG GGGCAGCTCA GATGAGCTGC AGTGCACGCT GCTGGTGGGC AAGGACGTGG 961 TGGTGGCCCC CTCCCACCTG CGGGTGGACA ACATCACGCA GATCTCCGCC CAGCTCTCCT 1021 GGCTACCCAC CAACAGCAAC TACAGCCACG TCATCTTCCT CAACGAGGAG GAGTTCGACA 1081 TCGTCAAGGC CGCCAGGTAC AAGTACCAGT TCTTCAATCT CAGGCCCAAC ATGGCCTATA 1141 AGGTGAAGGT TCTGGCCAAA CCCCACCAGA TGCCGTGGCA GCTCCCGCTG GAGCAAAGGG 1201 AGAAGAAGGA GGCCTTTGTG GAGTTCTCCA CGTTGCCTGC AGGACCCCCA GCACCCCCAC 1261 AAGATGTTAC CGTCCAGGCT GGGGTGACCC CCGCCACCAT CCGGGTCTCC TGGAGACCAC 1321 CTGTGCTGAC GCCCACCGGG CTGTCCAATG GCGCAAACGT TACCGGCTAC GGCGTGTATG 1381 CCAAAGGGCA GAGGGTGGCT GAAGTCATCT TCCCCACGGC AGACAGCACG GCCGTGGAGC 1441 TTGTGCGGCT GCGGAGCCTG GAGGCCAAGG GCGTGACCGT GCGGACCCTC TCCGCCCAGG 1501 GCGAGTCCGT GGACTCTGCA GTTGCTGCCG TTCCCCCCGA GCTCCTGGTG CCTCCTACCC 1561 CCCACCCGAG ACCTGCACCC CAATCAAAGC CATTAGCAAG TTCTGGAGTC CCCGAAACCA 1621 AAGACGAGCA CCTGGGTCCC CACGCCAGGA TGGATGAGGC CTGGGAGCAG AGCCGTGCAC 1681 CTGGCCCTGT GCATGGGCAC ATGCTGGAGC CGCCCGTGGG CCCCGGAAGG CGGTCGCCCT 1741 CACCCAGCCG CATCCTGCCA CAGCCACAGG GCACCCCGGT GTCCACCACC GTCGCCAAGG 1801 CCATGGCCCG GGAGGCCGCG CAGAGGGTGG CCGAGAGCAG CAGGTTAGAG AAAAGGAGCG 1861 TCTTCCTAGA GAGAAGCAGC GCGGGGCAGT ACGCCGCCTC AGACGAGGAG GACGCCTATG 1921 ACTCTCCAGA CTTCAAGAGG AGGGGCGCCT CGGTGGACGA CTTCCTGAAA GGCTCTGAAC 1981 TTGGCAAGCA GATGGTCTCC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2041 attgcttatc aatttgttgc aacgaac