Construct: ORF ccsbBroadEn_14089
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014420.1_s300c1, BRDN0000396887
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- R3HDM1 (23518)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23518 | R3HDM1 | R3H domain containing 1 | NM_001282799.2 | 8.2% | 6% | (many diffs) |
| 2 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510881.1 | 8.2% | 6% | (many diffs) |
| 3 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003728.1 | 8.1% | 5.9% | (many diffs) |
| 4 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_005263629.3 | 7.9% | 5.8% | (many diffs) |
| 5 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_005263628.3 | 7.9% | 5.8% | (many diffs) |
| 6 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510879.2 | 7.8% | 5.7% | (many diffs) |
| 7 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_005263627.3 | 7.8% | 5.7% | (many diffs) |
| 8 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003724.2 | 7.7% | 5.9% | (many diffs) |
| 9 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_005263626.3 | 7.7% | 5.7% | (many diffs) |
| 10 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510878.2 | 7.7% | 5.6% | (many diffs) |
| 11 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510877.2 | 7.6% | 5.6% | (many diffs) |
| 12 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003722.1 | 7.5% | 5.5% | (many diffs) |
| 13 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003723.1 | 7.5% | 5.5% | (many diffs) |
| 14 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510876.2 | 7.5% | 5.5% | (many diffs) |
| 15 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003721.1 | 7.5% | 5.5% | (many diffs) |
| 16 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003720.1 | 7.4% | 5.4% | (many diffs) |
| 17 | human | 23518 | R3HDM1 | R3H domain containing 1 | NM_001354199.2 | 7.3% | 5.3% | (many diffs) |
| 18 | human | 23518 | R3HDM1 | R3H domain containing 1 | NM_015361.4 | 7.3% | 5.3% | (many diffs) |
| 19 | human | 23518 | R3HDM1 | R3H domain containing 1 | NM_001282798.2 | 7.3% | 5.3% | (many diffs) |
| 20 | human | 23518 | R3HDM1 | R3H domain containing 1 | NM_001354200.2 | 7.3% | 5.3% | (many diffs) |
| 21 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510874.2 | 7.3% | 5.4% | (many diffs) |
| 22 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510875.2 | 7.3% | 5.4% | (many diffs) |
| 23 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510873.2 | 7.2% | 5.3% | (many diffs) |
| 24 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_017003719.1 | 7.1% | 5.5% | (many diffs) |
| 25 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510870.1 | 7.1% | 5.2% | (many diffs) |
| 26 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510871.1 | 7.1% | 5.2% | (many diffs) |
| 27 | human | 23518 | R3HDM1 | R3H domain containing 1 | XM_011510872.3 | 6.9% | 5.3% | (many diffs) |
| 28 | human | 23518 | R3HDM1 | R3H domain containing 1 | XR_001738687.1 | 5% | (many diffs) | |
| 29 | human | 23518 | R3HDM1 | R3H domain containing 1 | XR_001738686.1 | 5% | (many diffs) | |
| 30 | human | 23518 | R3HDM1 | R3H domain containing 1 | XR_001738683.1 | 4.9% | (many diffs) | |
| 31 | human | 23518 | R3HDM1 | R3H domain containing 1 | XR_001738685.1 | 4.9% | (many diffs) | |
| 32 | human | 23518 | R3HDM1 | R3H domain containing 1 | XR_001738684.1 | 4.6% | (many diffs) | |
| 33 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529423.3 | 7.5% | 5% | (many diffs) |
| 34 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529422.2 | 7.4% | 4.9% | (many diffs) |
| 35 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529421.2 | 7.2% | 4.8% | (many diffs) |
| 36 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529419.2 | 6.9% | 4.6% | (many diffs) |
| 37 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_017319906.1 | 6.9% | 4.6% | (many diffs) |
| 38 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529418.2 | 6.8% | 4.5% | (many diffs) |
| 39 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_006529417.2 | 6.7% | 4.4% | (many diffs) |
| 40 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | NM_181750.2 | 6.7% | 4.5% | (many diffs) |
| 41 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XM_011247982.2 | 6.7% | 4.5% | (many diffs) |
| 42 | mouse | 226412 | R3hdm1 | R3H domain containing 1 | XR_001784078.1 | 4.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 339
- ORF length:
- 273
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GATGTCTGAT ACTGTTACTG TAAAAGATGA AACTGCAACA ATGAAGGATT 121 TGGAGGCAGA AGTGAAAGAT ACAACCAGAG TTGAAAATCT TATCAAATCA GAAAACTATG 181 GGAAGATTTT GGTAGAGAAG AATGAACATT GTATTGAGAA CAATATAGAT TTGCAGGTAA 241 ACAGGAATTT TTCTCTGGCT ACAAATACTA AATATTCAGT ATATATTTAT GTTTATTTTC 301 ATACAAAACT CACTTCGCAA AATTCTAAAA GGATAAGTTG CCCAACTTTC TTGTACAAAG 361 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac