Construct: ORF ccsbBroadEn_14093

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006074.1_s300c1, BRDN0000396002
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PRKD3 (23683)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23683 PRKD3 protein kinase D3 NM_005813.5 68% 66.5% (many diffs)
2 human 23683 PRKD3 protein kinase D3 XM_005264237.4 68% 66.5% (many diffs)
3 human 23683 PRKD3 protein kinase D3 XM_024452776.1 68% 66.5% (many diffs)
4 human 23683 PRKD3 protein kinase D3 XM_005264238.3 56.3% 54.8% (many diffs)
5 human 23683 PRKD3 protein kinase D3 XM_017003741.2 48.6% 47.1% (many diffs)
6 human 23683 PRKD3 protein kinase D3 XM_017003742.2 48.6% 47.1% (many diffs)
7 human 23683 PRKD3 protein kinase D3 XM_017003743.2 38.9% 37.5% (many diffs)
8 human 23683 PRKD3 protein kinase D3 XM_017003744.2 38.9% 37.5% (many diffs)
9 human 23683 PRKD3 protein kinase D3 XM_024452777.1 38.9% 37.5% (many diffs)
10 mouse 75292 Prkd3 protein kinase D3 NM_001171004.1 60% 62.8% (many diffs)
11 mouse 75292 Prkd3 protein kinase D3 NM_029239.3 59.9% 62.5% (many diffs)
12 mouse 75292 Prkd3 protein kinase D3 NM_001171005.1 50.6% 52.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1869
ORF length:
1803
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG
61TTGGCATGTC TGCAAATAAT TCCCCTCCAT CAGCCCAGAA GTCTGTATTA CCCACAGCTA
121TTCCTGCTGT GCTTCCAGCT GCTTCTCCGT GTTCAAGTCC TAAGACGGGA CTCTCTGCCC
181GACTCTCTAA TGGAAGCTTC AGTGCACCAT CACTCACCAA CTCCAGAGGC TCAGTGCATA
241CAGTTTCATT TCTACTGCAA ATTGGCCTCA CACGGGAGAG TGTTACCATT GAAGCCCAGG
301AACTGTCTTT ATCTGCTGTC AAGGATCTTG TGTGCTCCAT AGTTTATCAA AAGTTTCCAG
361AGTGTGGATT CTTTGGCATG TATGACAAAA TTCTTCTCTT TCGCCATGAC ATGAACTCAG
421AAAACATTTT GCAGCTGATT ACCTCAACAG ATGAAATACA TGAAGGAGAC CTAGTGGAAG
481TGGTTCTTTC AGCTTTAGCC ACAGTAGAAG ACTTCCAGAT TCGTCCACAT ACTCTCTATG
541TACATTCTTA CAAAGCTCCT ACTTTCTGTG ATTACTGTGG TGAGATGCTC TGGGGATTGG
601TACGTCAAGG ACTGAAATGT GAAGGCTGTG GATTAAATTA CCATAAACGA TGTGCCTTCA
661AGATTCCAAA TAACTGTAGT GGAGTAAGAA AGAGACGTCT GTCAAATGTA TCTTTACCAG
721GACCCGGCCT CTCAGTTCCA AGACCCCTAC AGCCTGAATA TGTAGCCCTT CCCAGTGAAG
781AGTCACATGT CCACCAGGAA CCAAGTAAGA GAATTCCTTC TTGGAGTGGT CGCCCAATCT
841GGATGGAAAA GATGGTAATG TGCAGAGTGA AAGTTCCACA CACATTTGCT GTTCACTCTT
901ACACCCGTCC CACGATATGT CAGTACTGCA AGCGGTTACT GAAAGGCCTC TTTCGCCAAG
961GAATGCAGTG TAAAGATTGC AAATTCAACT GCCATAAACG CTGTGCATCA AAAGTACCAA
1021GAGACTGCCT TGGAGAGGTT ACTTTCAATG GAGAACCTTC CAGTCTGGGA ACAGATACAG
1081ATATACCAAT GGATATTGAC AATAATGACA TAAATAGTGA TAGTAGTCGG GGTTTGGATG
1141ACACAGAAGA GCCATCACCC CCAGAAGATA AGATGTTCTT CTTGGATCCA TCTGATCTCG
1201ATGTGGAAAG AGATGAAGAA GCCGTTAAAA CAATCAGTCC ATCAACAAGC AATAATATTC
1261CGCTAATGAG GGTTGTACAA TCCATCAAGC ACACAAAGAG GAAGAGCAGC ACAATGGTGA
1321AGGAAGGGTG GATGGTCCAT TACACCAGCA GGGATAACCT GAGAAAGAGG CATTATTGGA
1381GACTTGACAG CAAATGTCTA ACATTATTTC AGAATGAATC TGGATCAAAG TATTATAAGG
1441AAATTCCACT TTCAGAAATT CTCCGCATAT CTTCACCACG AGATTTCACA AACATTTCAC
1501AAGGCAGCAA TCCACACTGT TTTGAAATCA TTACTGATAC TATGGTATAC TTCGTTGGTG
1561AGAACAATGG GGACAGCTCT CATAATCCTG TTCTTGCTGC CACTGGAGTT GGACTTGATG
1621TAGCACAGAG CTGGGAAAAA GCAATTCGCC AAGCCCTCAT GCCTGTTACT CCTCAAGCAA
1681GTGTTTGCAC TTCTCCAGGG CGAGGGAAAG ATCACAAAGA TTTGTCTACA AGTATCTCTG
1741TATCTAATTG TCAGATTCAG GAGAATGTGG ATATCAGTAC TGTTTACCAG ATCTTTGCAG
1801ATGAGGTGCT TGGTTCAGGC CAGTTTGGCA TCGTTTATGG AGGTAAGCAA CTACAGCCGT
1861TTGCATATTG AACACATTAT TTTAAAAACT GGAAAATGTA CCCAACTTTT CTTGTACAAA
1921GTtggcatta taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.