Construct: ORF ccsbBroadEn_14119
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014469.1_s300c1, BRDN0000389415
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INVS (27130)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27130 | INVS | inversin | NM_014425.5 | 9.3% | 8.7% | (many diffs) |
| 2 | human | 27130 | INVS | inversin | NR_134606.1 | 6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 369
- ORF length:
- 303
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAAGTCAGAG AACCTGCTGT TTGCTGGTTC ATCATTAGCA TCACAAGTCC 121 ATGCTGCTGC CGTTAATGGA GATAAGGGTG CTCTACAGAG GCTCATCGTA GGAAACTCTG 181 CTCTTAAAGA CAAAGAAGAT CAGTTTGGGA GAACACCACT TATGTATTGC GTGTTGGCTG 241 ACAGATTGGA TTGTGCAGAT GCTCTTCTGA AGGCAGGAGC AGATGTGAAT AAAACTGACC 301 ATAGCCAGAG AACAGCCCTC CATCTTGCAG CCCAGAAGGC ATTGAGAACA ATCCGCACAG 361 GCAGGATCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 421 tttgttgcaa cgaac