Construct: ORF ccsbBroadEn_14210
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004740.1_s300c1, BRDN0000395924
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ALLC (55821)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55821 | ALLC | allantoicase | NM_018436.4 | 94.9% | 94.6% | (many diffs) |
| 2 | human | 55821 | ALLC | allantoicase | XM_017004495.1 | 88.8% | 88.4% | (many diffs) |
| 3 | human | 55821 | ALLC | allantoicase | XM_011510369.2 | 83.9% | 83.6% | (many diffs) |
| 4 | human | 55821 | ALLC | allantoicase | XM_017004496.2 | 83.9% | 83.6% | (many diffs) |
| 5 | human | 55821 | ALLC | allantoicase | XM_011510370.2 | 61.6% | 61.4% | 0_1ins468;490_492delGAA;755C>T |
| 6 | human | 55821 | ALLC | allantoicase | XM_017004497.1 | 61.6% | 61.4% | 0_1ins468;490_492delGAA;755C>T |
| 7 | human | 55821 | ALLC | allantoicase | XM_017004498.1 | 55.6% | 52.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1293
- ORF length:
- 1227
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGTATGGC AGATGCTCCG AAGGAGGGAA GACTGACCCG GTTTCTGGAC TTCACCCAGC 121 TGATGGACAT GGCATCTGAA TCCGTAGGAG GAAAAATTTT ATTTGCAACA GATGACTTTT 181 TTGCTCCTGC AGAAAACCTC ATAAAGAGTG ACAGCCCGTG CTTCAAAGAG CATGAATATA 241 CGGAGTTTGG GAAATGGATG GATGGCTGGG AGACCAGGAG GAAAAGGATT CCAGGTCACG 301 ACTGGTGTGT CCTCAGGCTG GGGATCCAAG GAGTCATCCG GGGCTTCGAC GTGGACGTTT 361 CTTACTTCAC GGGAGATTAC GCTCCTCGAG TGTCCATTCA AGCAGCAAAC TTGGAAGAAG 421 ATAAACTACC AGAAATCCCA GAAAGAGGAA TCAGGACAGG AGCTGCAGCC ACTCCTGAGG 481 AGTTTGAAGC CATTGCTGAG CTAAAATCCG ACGACTGGAG TTACTTGGTT CCCATGACTG 541 AGCTTAAGCC AGGAAACCCT GCTTCCGGCC ACAACTATTT TCTTGTCAAT TCCCAGCAGA 601 GATGGACTCA TATCAGACTC AACATTTTCC CAGATGGTGG AATTGCACGA CTTAGAGTAT 661 TCGGTACTGG ACAAAAAGAC TGGACTGCAA CTGACCCCAA AGAACCTGCA GACCTAGTGG 721 CCATCGCTTT TGGGGGTGTC TGTGTAGGAT TTAGTAATGC TAAGTTTGGG CACCCAAACA 781 ATATAATAGG AGTTGGCGGG GCAAAGTCTA TGGCGGATGG TTGGGAAACT GCAAGAAGGC 841 TGGACCGGCC ACCAATATTA GAAAATGATG AGAATGGCAT TCTCTTGGTT CCGGGTTGTG 901 AATGGGCAGT TTTCCGATTG GCACATCCTG GAGTAATAAC TCGAATTGAA ATTGACACAA 961 AATATTTTGA AGGCAATGCT CCTGACAGCT GTAAAGTGGA TGGGTGCATC CTGACAACTC 1021 AGGAAGAAGC CGTGATCAGG CAAAAGTGGA TTCTCCCGGC CCACAAGTGG AAACCACTGC 1081 TTCCAGTGAC CAAGTTGTCT CCCAACCAAA GTCATCTGTT CGATAGCCTG ACCCTAGAGC 1141 TCCAAGATGT CATCACTCAC GCCAGGCTCA CCATCGTCCC CGACGGGGGA GTGAGCCGCC 1201 TTCGGCTCCG GGGCTTCCCC AGCTCCATCT GCCTCCTGAG GCCCCGGGAG AAGCCCATGT 1261 TGAAGTTCTC GGTGAGCTTC AAAGTAAACC CTTACCCAAC TTTCTTGTAC AAAGTtggca 1321 ttataagaaa gcattgctta tcaatttgtt gcaacgaac