Construct: ORF ccsbBroadEn_14219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017715.1_s300c1, BRDN0000395910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf16 (56673)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56673 | C11orf16 | chromosome 11 open reading ... | NM_020643.3 | 86% | 85.4% | (many diffs) |
| 2 | human | 56673 | C11orf16 | chromosome 11 open reading ... | XM_017018013.1 | 86% | 85.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1278
- ORF length:
- 1212
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ATCCTTCACG GGGCCCAGGA TGCCTTTGCT CAAATACTGC AGCGTGGCCA 121 CAAGCCTGAA GGCCCCTGGC TGGGACGGTG CTGCTCCACC TTGGGACCTC TCCTTCACCT 181 ACCCCTTTGC CCTCCAAGCA CCCTGGCTCA CCGGGCACAA GCCCCTTGCA AGGCATGCCT 241 CTTCTTGCCC ATGTCTCCAC GTTGCCGACC CAGCATGGCA GGGGCCTGGC TGGCTGGGAA 301 GAGCTGGAGA TGCTGCCAAC ACATGGGTCC TAGCAAGAAG GGAAGCAGAT GGTTTTTACT 361 ACCGGGCCCA AATAAAGGCC ACTCCCGAGC TGGAGAGACA GGGGGTCCTG CTTGTGGAAT 421 TCGAGGCTCC ACTTGTCGCA GGCCCAAAGC TGCCAGCCCA GCAGCAGAGA GTGGTCTTAG 481 AAGAGGATGT CATTCCTCTC TCACCATCTG TAGGATACTC ACTGAGACCA GGGGATAAGG 541 TGCTGGCACT CTGGGAGCCA GGCCAACAGC AGTATGGCCC TGGCACTGTT CTTTTGGGCT 601 TGGAGATGAG AGATCCCCAG AGAGCATCAA AGGAAAAAGA AATCACTGTT CATTTCTGGA 661 ATGGCAAAGC TGCTAAAGTG CCCCTAGGTG GGGTCCAGTC GGTGTCCCTG ACCATCTGGA 721 AGAAGGCTGT GGAGAGGCTG CACAAGTCTT TCACCAGGGA GCACCCCAGG CCCCTTCACT 781 GGGCCCCTTG CTGCTCTCTG CTAGGGCCAA TCACTGGGCG CATCACTAAT GAGCTTCCTC 841 CGGATGCTCC ATTCCTGTGC CCTCTCTGCC ACCATCATGC CTGCTGCCAG CTACTGTGCC 901 AGGGCTGCCT CTGTGGCTGC CCGCCATGTG GCACGACTTG GTGGCCTCTA ACCAGGACCT 961 CAGAAGTCAT GGCCAGAGAA CTTCCAGAGT TGGAGGCCAC AGCACAGCTT TTGCCCCTGG 1021 AAGGTCCTAA AGAGGAGAAA GTAGCAATGC ACGCTCCCCT GGCTGTTTCT TCCTCCTCAT 1081 CCTCCTCCTG TGAACAAGAC GGTGTGGAGA ATGATCTGGA GATGGGCCCT CCCCAGAGAC 1141 TGATGGTGAA CAGTGCAGTC AACACAGATC CCATCTTTCT TGAGATGCCT CTGAGACAGA 1201 GTGGCCTCTG CCAGCCTGAG TGGAGGTATT GGAAGAGAAA CGGGCCTGAG CCATGCCCTG 1261 GGAAGCCAGG TAAAGAATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1321 gcttatcaat ttgttgcaac gaac