Construct: ORF ccsbBroadEn_14264

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005252.1_s300c1, BRDN0000385855
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNASEH2B (79621)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79621 RNASEH2B ribonuclease H2 subunit B NM_024570.4 92.8% 91.5% 616G>A;908_914delTAAAAAA;936_937ins64
2 human 79621 RNASEH2B ribonuclease H2 subunit B XM_006719867.4 87.5% 86.1% (many diffs)
3 human 79621 RNASEH2B ribonuclease H2 subunit B XM_011535229.1 78.1% 73% (many diffs)
4 human 79621 RNASEH2B ribonuclease H2 subunit B NM_001142279.2 76.8% 72.6% (many diffs)
5 human 79621 RNASEH2B ribonuclease H2 subunit B XM_011535231.2 76.8% 75.2% (many diffs)
6 human 79621 RNASEH2B ribonuclease H2 subunit B XM_011535230.2 75.6% 72.6% (many diffs)
7 human 79621 RNASEH2B ribonuclease H2 subunit B XM_017020747.1 75% 73% (many diffs)
8 human 79621 RNASEH2B ribonuclease H2 subunit B XM_011535233.2 50.9% 48.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1059
ORF length:
993
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGCTGGCGTG GACTGCGGGG ACGGGGTTGG CGCCCGGCAG CACGTGTTCC
121TGGTTTCAGA ATATTTAAAA GATGCTTCAA AGAAGATGAA AAATGGGCTA ATGTTTGTAA
181AACTGGTTAA CCCCTGTTCA GGAGAAGGAG CCATTTACTT GTTCAATATG TGTCTACAGC
241AGCTGTTTGA AGTAAAAGTT TTCAAGGAAA AACACCATTC TTGGTTTATA AATCAATCAG
301TTCAATCAGG AGGTCTTCTC CATTTTGCCA CACCTGTGGA TCCTCTATTT CTGCTTCTCC
361ACTACCTCAT AAAGGCTGAT AAGGAGGGGA AGTTTCAGCC CCTTGATCAA GTTGTGGTGG
421ATAACGTGTT TCCAAATTGC ATCTTGTTGC TGAAACTTCC TGGACTTGAG AAGTTACTTC
481ATCATGTGAC AGAGGAAAAA GGTAATCCAG AAATAGACAA CAAGAAATAT TACAAGTACA
541GCAAAGAGAA GACATTAAAG TGGCTGGAAA AAAAGGTTAA TCAAACTGTG GCAGCATTAA
601AAACCAATAA TGTGAATGTC AGTTCCCGGG TACAGTCAAC TGCATTTTTC TCTGGTGACC
661AAGCTTCCAC TGACAAGGAA AAGGATTATA TTCGTTATGC CCATGGTCTG ATATCTGACT
721ACATCCCTAA AGAATTAAGT GATGACTTAT CTAAATACTT AAAGCTTCCA GAACCTTCAG
781CCTCATTGCC AAATCCTCCA TCAAAGAAAA TAAAGTTATC AGATGAGCCT GTAGAAGCAA
841AAGAAGATTA CACTAAGTTT AATACTAAAG ATTTGAAGAC TGAAAAGAAA AATAGCAAAA
901TGACTGCAGC TCAGAAGGCT TTGGCTAAAG TTGACAAGAG TGGAATGAAA AGTATTGATA
961CCTTTTTTGG GGTAAAAAAA AAATTGGAAA GGTTTGAAAC TTTGAAAATA AAATCTAGCA
1021AAAATATTTG CTTTTTACAT GTTTCAGTTT GTCCTTACTG CCCGACTTTC TTGTACAAAG
1081Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)