Construct: ORF ccsbBroadEn_14272

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009802.1_s300c1, BRDN0000386605
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMC5 (79838)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79838 TMC5 transmembrane channel like 5 NM_024780.5 99.9% 99.7% 2274delA
2 human 79838 TMC5 transmembrane channel like 5 NM_001105248.1 71.4% 63.2% (many diffs)
3 human 79838 TMC5 transmembrane channel like 5 NM_001261841.2 71.4% 63.2% (many diffs)
4 human 79838 TMC5 transmembrane channel like 5 NM_001308161.1 66.4% 58.3% (many diffs)
5 human 79838 TMC5 transmembrane channel like 5 NM_001105249.1 65.8% 57.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2346
ORF length:
2280
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GTCCGATGAC CACGTGAATG AAATCATCAT ACAGGTTGAG AATGTTTCCT
121CTGGGGTCCA AAGCCACCCA TCCTCAAATC AGATTTTTCA AGAAAAGGTG CTGCTAGACT
181CAAGCATCAA CATGGTTTTG TCAATATCTG ACATTGATGT GATAGACTCT CAGACAGTCA
241GCAAAAGGAA TGACCAAAAG GGTAACCAGG TGCTGCGGTT TTCAACATCT TTGAATGAGT
301CGATGTCTCA GACCCTTCAT AGCCTAGAAT GCATGGGCAT AGACACTCCT GGTTCTTCAC
361ATGAAACTGT TCAAGGACAG AAGTTAATCG CATCCCTTAT ACCCATGACA TCCAGAGACA
421GAATTAAAGC CATCAGGAAC CAGCCAAGGA CCATGGAAGA GAAAAGGAAC CTTAGGAAAA
481TAGTTGACAA AGAAAAAAGC AAACAGACCC ATCGTATCCT TCAGCTCAAT TGCTGTATTC
541AGTGTCTGAA CTCCATTTCC CGGGCTTATC GGAGATCCAA GAACAGCCTG TCGGAAATTC
601TGAATTCCAT CAGCCTGTGG CAGAAGACGC TGAAGATCAT TGGAGGCAAG TTTGGAACCA
661GCGTCCTCTC CTATTTCAAC TTTCTGAGAT GGCTTTTGAA GTTCAACATT TTCTCATTCA
721TCCTGAACTT CAGCTTCATC ATAATCCCTC AGTTTACCGT GGCCAAAAAG AACACCCTCC
781AGTTCACTGG GCTGGAGTTT TTCACTGGGG TGGGTTATTT TAGGGACACA GTGATGTACT
841ATGGCTTTTA CACCAATTCC ACCATCCAGC ACGGGAACAG CGGGGCATCC TACAACATGC
901AGCTGGCCTA CATCTTCACA ATCGGAGCAT GCTTGACCAC CTGCTTCTTC AGTTTGCTGT
961TCAGCATGGC CAAGTATTTC CGGAACAACT TCATTAATCC CCACATTTAC TCCGGAGGGA
1021TCACCAAGCT GATCTTTTGC TGGGACTTCA CTGTCACTCA TGAAAAAGCT GTGAAGCTAA
1081AACAGAAGAA TCTTAGCACT GAGATAAGGG AGAACCTGTC AGAGCTCCGT CAGGAGAATT
1141CCAAGTTGAC GTTCAATCAG CTGCTGACCC GCTTCTCTGC CTACATGGTA GCCTGGGTTG
1201TCTCTACAGG AGTGGCCATA GCCTGCTGTG CAGCCGTTTA TTACCTGGCT GAGTACAACT
1261TAGAGTTCCT GAAGACACAC AGTAACCCTG GGGCGGTGCT GTTACTGCCT TTCGTTGTGT
1321CCTGCATTAA TCTGGCCGTG CCATGCATCT ACTCCATGTT CAGGCTTGTG GAGAGGTACG
1381AGATGCCACG GCACGAAGTC TACGTTCTCC TGATCCGAAA CATCTTTTTG AAAATATCAA
1441TCATTGGCAT TCTTTGTTAC TATTGGCTCA ACACCGTGGC CCTGTCTGGT GAAGAGTGTT
1501GGGAAACCCT CATTGGCCAG GACATCTACC GGCTCCTTCT GATGGATTTT GTGTTCTCTT
1561TAGTCAATTC CTTCCTGGGG GAGTTTCTGA GGAGAATCAT TGGGATGCAA CTGATCACAA
1621GTCTTGGCCT TCAGGAGTTT GACATTGCCA GGAACGTTCT AGAACTGATC TATGCACAAA
1681CTCTGGTGTG GATTGGCATC TTCTTCTGCC CCCTGCTGCC CTTTATCCAA ATGATTATGC
1741TTTTCATCAT GTTCTACTCC AAAAATATCA GCCTGATGAT GAATTTCCAG CCTCCGAGCA
1801AAGCCTGGCG GGCCTCACAG ATGATGACTT TCTTCATCTT CTTGCTCTTT TTCCCATCCT
1861TCACCGGGGT CTTGTGCACC CTGGCCATCA CCATCTGGAG ATTGAAGCCT TCAGCTGACT
1921GTGGCCCTTT TCGAGGTCTG CCTCTCTTCA TTCACTCCAT CTACAGCTGG ATCGACACCC
1981TAAGTACACG GCCTGGCTAC CTGTGGGTTG TTTGGATCTA TCGGAACCTC ATTGGAAGTG
2041TGCACTTCTT TTTCATCCTC ACCCTCATTG TGCTAATCAT CACCTATCTT TACTGGCAGA
2101TCACAGAGGG AAGGAAGATT ATGATAAGGC TGCTCCATGA GCAGATCATT AATGAGGGCA
2161AAGATAAAAT GTTCCTGATA GAAAAATTGA TCAAGCTGCA GGATATGGAG AAGAAAGCAA
2221ACCCCAGCTC ACTTGTTCTG GAAAGGAGAG AGGTGGAGCA ACAAGGCTTT TTGCATTTGG
2281GGGAACATGA TGGCAGTCTT GACTTGCGAT CTAGAAGATC AGTTCAAGAA GGTAATCCAG
2341GGCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct tatcaatttg
2401ttgcaacgaa c

Download FASTA (ORF) (Full)