Construct: ORF ccsbBroadEn_14274
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005162.1_s300c1, BRDN0000393211
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF671 (79891)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79891 | ZNF671 | zinc finger protein 671 | NM_024833.3 | 96% | 96% | 1602_1603ins66 |
| 2 | human | 79891 | ZNF671 | zinc finger protein 671 | NM_001321376.2 | 82.1% | 82.1% | 0_1ins231;1371_1372ins66 |
| 3 | human | 79891 | ZNF671 | zinc finger protein 671 | XM_017027314.1 | 82.1% | 82.1% | 0_1ins231;1371_1372ins66 |
| 4 | human | 79891 | ZNF671 | zinc finger protein 671 | NM_001321375.2 | 78.4% | 78.4% | 0_1ins294;1308_1309ins66 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1734
- ORF length:
- 1668
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GTCCCCAGTG TCCCGAGACG CGTCTGATGC TCTGCAGGGA CGGAAGTGCC 121 TGCGTCCCCG ATCGAGACGC CTGCCGCTCC CGGCAGCTGT CCGCGCCCAC GGTCCTATGG 181 CGGAGCTAAC GGACTCCGCG CGGGGCTGTG TGGTCTTTGA GGATGTGTTT GTATACTTCT 241 CTCGGGAAGA ATGGGAGCTT CTTGATGATG CTCAGAGACT TTTGTACCAT GATGTGATGC 301 TGGAGAACTT TGCACTTTTA GCCTCACTGG GAATTGCATT TTCCAGATCA CGTGCAGTCA 361 TGAAACTAGA GCGAGGAGAA GAGCCCTGGG TGTATGACCA GGTGGATATG ACTTCAGCCA 421 CAGAAAGAGA GGCCCAGAGG GGACTTAGAC CTGGTTGTTG GCATGGAGTG GAGGATGAAG 481 AGGTATCTTC TGAGCAGAGC ATTTTTGTAG CAGGAGTGTC AGAGGTCAGG ACTCTCATGG 541 CAGAGCTGGA GTCTCACCCA TGTGACATAT GTGGCCCAAT ATTGAAAGAT ACCTTACACC 601 TGGCTAAATA CCATGGGGGA AAAGCCAGGC AGAAACCATA CTTGTGTGGG GCATGTGGAA 661 AGCAATTCTG GTTCAGTACA GACTTTGACC AGCACCAGAA CCAGCCCAAT GGAGGGAAAC 721 TTTTCCCAAG GAAGGAGGGC AGAGACTCTG TGAAAAGCTG CAGAGTCCAT GTGCCAGAGA 781 AGACCCTCAC ATGTGGGAAA GGTAGGAGAG ACTTTTCAGC CACATCTGGC CTTCTTCAGC 841 ATCAGGCCTC TCTCAGCAGC ATGAAGCCCC ACAAGAGCAC TAAGCTTGTG AGTGGCTTTC 901 TCATGGGACA GAGGTATCAC AGGTGTGGTG AATGTGGGAA AGCCTTCACC CGCAAAGACA 961 CACTTGCTCG GCATCAGAGA ATCCACACTG GAGAAAGGCC TTATGAGTGT AACGAATGTG 1021 GGAAATTCTT CAGCCAAAGC TATGACCTCT TTAAACACCA GACAGTTCAC ACTGGAGAAA 1081 GGCCATACGA GTGCAGCGAA TGTGGGAAAT TCTTTAGACA AATCTCCGGC CTGATTGAGC 1141 ACAGGCGAGT TCACACGGGT GAAAGACTCT ATCAGTGTGG CAAATGTGGG AAATTTTTTA 1201 GCAGTAAGTC TAATCTCATT CGACACCAGG AAGTTCACAC AGGAGCCAGG CCTTATGTAT 1261 GCAGCGAATG TGGGAAAGAG TTCAGTCGGA AACACACACT TGTTCTGCAC CAACGAACTC 1321 ACACTGGAGA AAGGCCTTAT GAGTGCAGTG AATGTGGGAA GGCCTTTAGC CAAAGCTCCC 1381 ACCTTAATGT ACACTGGAGA ATTCACAGCA GTGATTATGA GTGTAGCAGA TGTGGTAAAG 1441 CTTTCAGCTG CATCTCCAAA CTCATTCAGC ACCAGAAAGT TCACTCTGGA GAAAAGCCTT 1501 ATGAGTGCAG CAAGTGCGGG AAAGCCTTCA CTCAAAGACC CAACCTCATC AGGCACTGGA 1561 AAGTCCACAC TGGGGAAAGG CCTTATGTGT GTAGTGAGTG CGGGAGAGAA TTCATCCGGA 1621 AACAGACACT TGTTCTGCAC CAGAGGGTTC ATGCTGGAGA AAAGCTTAAG AGTGTAGCAA 1681 ATGTGGGGGA AAGTCTTAGG CCAATGCCCC TGACTTACTA TCTGGTGGGC AACTACCCAA 1741 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac