Construct: ORF ccsbBroadEn_14287

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005425.1_s300c1, BRDN0000456582
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BHLHB9 (80823)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142524.2 99.8% 98.9% 705C>A;1621delA
2 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142525.2 99.8% 98.9% 705C>A;1621delA
3 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142526.2 99.8% 98.9% 705C>A;1621delA
4 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142527.2 99.8% 98.9% 705C>A;1621delA
5 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142528.2 99.8% 98.9% 705C>A;1621delA
6 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142529.1 99.8% 98.9% 705C>A;1621delA
7 human 80823 BHLHB9 basic helix-loop-helix fami... NM_001142530.1 99.8% 98.9% 705C>A;1621delA
8 human 100528062 ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough NM_001350268.2 99.8% 98.9% 705C>A;1621delA
9 human 100528062 ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough NM_001350269.2 99.8% 98.9% 705C>A;1621delA
10 human 100528062 ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough NM_001350270.1 99.8% 98.9% 705C>A;1621delA
11 human 80823 BHLHB9 basic helix-loop-helix fami... NM_030639.3 99.8% 98.9% 705C>A;1621delA
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1707
ORF length:
1641
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGGGACTAAG AATAAGACAA GAGCCCAGGC CAAAACTGAA AAAAAGGCTG
121CTATACAAGC TAAAGCTGGA GCAGAGAGGG AGGCTACTGG TGTTGTTAGG CCTGTAGCCA
181AGACCAGGGC CAAAGCAAAA GCCAAGACAG GGTCTAAGAC AGATGCAGTA GCAGAGATGA
241AGGCAGTGTC TAAGAACAAG GTTGTTGCTG AGACGAAGGA AGGAGCTCTG TCAGAGCCTA
301AGACTCTGGG CAAAGCCATG GGAGATTTCA CTCCCAAGGC TGGGAATGAG TCCACCAGCT
361CCACATGTAA AAATGAGGCT GGTACTGATG CCTGGTTCTG GGCTGGGGAA GAGGCCACTA
421TCAATTCCTG GTTCTGGAAT GGAGAAGAGG CTGGTAATAG TTTCAGCACT AAGAATGATA
481AACCTGAAAT TGGTGCCCAG GTCTGTGCTG AGGAGTTGGA ACCTGCGGCT GGGGCCGATT
541GCAAACCTAG GTCAGGGGCT GAGGAGGAGG AGGAAGAGAA TGTTATTGGG AACTGGTTTT
601GGGAAGGAGA TGATACTAGT TTTGACCCTA ATCCTAAACC TGTGAGCAGG ATAGTTAAGC
661CTCAGCCTGT GTATGAAATT AATGAAAAAA ATAGGCCCAA GGACTGGTCT GAGGTAACTA
721TCTGGCCCAA TGCCCCTGCT GTAACTCCAG CTGTGTTAGG ATTTAGATCA CAGGCACCAT
781CTGAGGCAAG CCCTCCTTCA TATATTGTTC TGGCCTCCGC TGAAGAAAAT GCCTGTTCTT
841TGCCTGTGGC AACAGCTTGC CGCCCTTCTA GGAACACTCG CTCATGCTCA CAGCCTATCC
901CTGAGTGTCG TTTTGATTCT GACCCCTGCA TCCAGACCAT AGATGAGATT AGACGTCAAA
961TCAGGATCAG GGAGGTAAAT GGGATTAAGC CATTTGCTTG TCCTTGCAAA ATGGAATGCT
1021ATATGGATTC TGAGGAATTT GAAAAACTTG TTAGCTTACT TAAGTCAACT ACTGATCCTC
1081TTATTCATAA AATAGCACGG ATTGCAATGG GTGTCCATAA TGTTCACCCA TTTGCCCAAG
1141AGTTTATTAA CGAAGTAGGT GTAGTGACAC TTATTGAAAG CTTGCTCAGT TTTCCTTCCC
1201CTGAAATGAG AAAAAAGACT GTAATTACTC TGAATCCTCC TTCTGGGGAT GAAAGACAAC
1261GCAAAATTGA ATTACATGTT AAGCATATGT GTAAAGAAAC CATGTCATTT CCTTTGAACT
1321CACCGGGACA GCAATCTGGA TTAAAGATAC TAGGACAACT GACTACTGAT TTTGTCCATC
1381ACTACATTGT TGCCAATTAC TTTTCAGAGC TTTTCCATTT GCTGTCCTCA GGAAATTGCA
1441AAACCAGAAA TCTTGTTTTG AAACTACTTT TAAATATGTC TGAAAATCCA ACTGCAGCCA
1501GAGACATGAT CAATATGAAG GCATTGGCAG CATTAAAACT CATCTTTAAC CAGAAAGAGG
1561CAAAAGCCAA TCTTGTTAGT GGTGTGGCCA TATTTATTAA CATAAAGGAG CATATCAGAA
1621AAGGCTCAAT TGTAGTTGTT GATCACTTGA GTTATAATAC ACTCATGGCC ATTTTCAGGG
1681AAGTTAAGAG ATTATTGAAA CAATGTACCC AACTTTCTTG TACAAAGTTG Gcattataag
1741aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)