Construct: ORF ccsbBroadEn_14315
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009994.1_s300c1, BRDN0000389475
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF607 (84775)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84775 | ZNF607 | zinc finger protein 607 | NM_001172677.1 | 53.2% | 53.2% | 1_972del;1413A>G;1589A>G |
| 2 | human | 84775 | ZNF607 | zinc finger protein 607 | XM_006723436.3 | 53.2% | 53.2% | 1_972del;1413A>G;1589A>G |
| 3 | human | 84775 | ZNF607 | zinc finger protein 607 | NM_032689.5 | 53.2% | 53.1% | 1_975del;1416A>G;1592A>G |
| 4 | human | 84775 | ZNF607 | zinc finger protein 607 | XM_006723435.4 | 53.2% | 53.1% | 1_975del;1416A>G;1592A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1179
- ORF length:
- 1113
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA TCAGAGAATT TATTCAGGGG AGAAACACTA TGAATGTAAA GAAAATGGGG 121 AGGCTTTTAG TAGTGGCCAT CAACTTACTG CACCTCATAC ATTTGAAAGT GTTGAGAAAC 181 CTTATAAGTG TGAGGAATGT GGGAAAGCCT TTAGTGTGCA TGGACGACTT ACTCGACATC 241 AGGGTATTCA TAGTGGTAAG AAACCCTATG AATGTAACAA ATGTGGGAAG TCCTTTAGGC 301 TCAATTCATC CCTTAAAATA CATCAAAATA TTCATACCGG TGAGAAACCC TACAAATGTA 361 AGGAATGTGG GAAGGCCTTC AGTCAGCGTG CACACCTTGC CCATCATAAC AGAATTCATA 421 CTGGTTACAA ACCCTTTGAA TGTAAAGAAT GTGGGAAGTC CTTTCGTTGT GCCTCATATC 481 TTGTTATACA TGAGAGAATT CATACGGGAG AGAAACCCTA TGTATGTCAA GAGTGTGGGA 541 AGGGTTTTAG TTATAGCCAT AAACTCACTA TACATCGCAG AGTTCATACT GGTGAGAAAC 601 CTTATGAATG TAAGGAATGT GGGAAGGCCT TTAGTGTATC TGGACAACTT ACTCAGCATC 661 TGAGTATTCA CAGTGGTAAG AGACCCTTTG AATGCAACAA ATGCGGGAAG TCTTTTAGGT 721 TCATTTCTGT ACTTAAAGCC CATCAGAATA TTCATAGCGC TGAGAAACCC TACGAATGTA 781 AGGAATGTGG CAAGGCCTTT CGTCATGCCA CAAGCCTCAT ATATCATGAC CGAACTCATG 841 CTGGTGAAAA GTCCTATGAA TGTAAAGAAT GTGGGGAAAC TTTTAGTCAT GCTTCACATC 901 TTATTATTCA TGAGAGAATT CATACCAGTG ATAAACCCTA TGAATGTAAA AGATGTGGGA 961 AGGCATTTCA CTGTGCCTCA TATCTTGTTA GACATGAAAG CGTTCATGCT GATGGAAATC 1021 CCTATATGTG TGAAGAGTGT GGGAAAGCTT TTAATAGTAG CCATGAACTT AGTATACATC 1081 ATAGAGTTCA TACTGGTGAG AAACCCTTTA AATGTAACAA ATGCAGAAGG TCCTTTAGGC 1141 TTAGATCCAT CCTTGAAGTA CATCAGAGAA TTCATATTTG CCCAACTTTC TTGTACAAAG 1201 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac