Construct: ORF ccsbBroadEn_14323
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014265.1_s300c1, BRDN0000387518
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC183 (84960)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84960 | CCDC183 | coiled-coil domain containi... | NM_001039374.5 | 10.2% | 7.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 354
- ORF length:
- 288
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GTCCAGGACC GAGGAGGGCG ACACAAAGGT GAGGGACACC CTGGAGTCCT 121 CGACTCTGAT GGAGAAGTAC AACACCAGGA TCAGCTTTGA GAACCGGGAG GAGGATATGA 181 TCGGACTGCT GCGGACGCTG GGGCGACCGG GGTCTCGGAG AGGAGCACGG GACACGCAGG 241 ATCGGGGGAG GTTCTGCGTA AGGAGGCAGC CCGGGCCCGG AACTGCGCGC CAGAACCGCG 301 TGCGCATGCG CcgaccGCGC GCGCCGCGCC CCCGCGGCCC TCGCGGCGCC CCGTACCCAA 361 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac