Construct: ORF ccsbBroadEn_14341
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006569.1_s300c1, BRDN0000387353
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTG1 (92170)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92170 | MTG1 | mitochondrial ribosome asso... | NM_138384.4 | 89.6% | 89.2% | 1_102del;877A>G;997T>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 966
- ORF length:
- 900
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CAAGGGGCTG AAGAAGATGC AGAGCAGCCT GAAGCTGGTG GACTGTATCA 121 TCGAGGTCCA CGATGCCCGG ATCCCACTTT CAGGCCGCAA CCCTCTGTTT CAGGAAACCC 181 TTGGGCTTAA GCCTCACTTG CTGGTCCTCA ACAAGATGGA CTTGGCGGAT CTTACAGAGC 241 AGCAGAAAAT TATGCAACAC TTAGAAGGAG AAGGCCTAAA AAATGTCATT TTTACCAACT 301 GTGTAAAGGA TGAAAATGTC AAGCAGATCA TCCCGATGGT CACTGAACTG ATTGGGAGAA 361 GCCACCGCTA CCACCGAAAA GAGAACCTGG AGTACTGTAT CATGGTCATT GGGGTCCCCA 421 ACGTGGGCAA GTCCTCCCTC ATCAACTCCC TCCGGAGGCA GCACCTCAGG AAAGGGAAAG 481 CCACCAGGGT GGGTGGCGAG CCTGGGATCA CCAGAGCTGT GATGTCCAAA ATTCAGGTCT 541 CTGAGCGGCC CCTGATGTTC CTGTTGGACA CTCCTGGCGT GCTGGCTCCT CGGATTGAAA 601 GTGTGGAGAC AGGCCTGAAG CTGGCCCTGT GTGGAACGGT GCTGGACCAC CTGGTCGGGG 661 AGGAGACCAT GGCTGACTAC CTGCTGTACA CCCTCAACAA ACACCAGCGC TTTGGGTACG 721 TGCAGCACTA CGGCCTGGGC AGTGCCTGTG ACAACGTAGA GCGCGTGCTG AAGAGTGTGG 781 CTGTGAAGCT GGGGAAGACG CAGAAGGTGA AGGTGCTCAC GGGCACGGGT AACGTGAACG 841 TTATTCAGCC TAACTATCCT GCGGCAGCCC GTGACTTCCT GCAGACTTTC CGCCGTGGGC 901 TGCTGGGTTC CGTGATGCTG GACCTCGACG TCCTGCGGGG CCACCCCCCG GCTGAGACTA 961 TGCCCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1021 gttgcaacga ac