Construct: ORF ccsbBroadEn_14375

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000041.1_s300c1, BRDN0000392706
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
FLACC1 (130540)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 130540 FLACC1 flagellum associated contai... NM_001127391.3 99.7% 61.6% 127G>C;772_773insAA
2 human 130540 FLACC1 flagellum associated contai... NM_001289993.2 99.7% 61.6% 127G>C;772_773insAA
3 human 130540 FLACC1 flagellum associated contai... XM_011510606.3 98.5% 60.8% 127G>C;772_773insAA;941_955del
4 human 130540 FLACC1 flagellum associated contai... NM_139163.3 94.6% 58.4% 127G>C;772_773insAA;941_1009del
5 human 130540 FLACC1 flagellum associated contai... XM_024452696.1 94.6% 58.4% 127G>C;772_773insAA;941_1009del
6 human 130540 FLACC1 flagellum associated contai... XM_024452697.1 89.3% 67.5% (many diffs)
7 human 130540 FLACC1 flagellum associated contai... XM_017003361.2 75.6% 80.4% (many diffs)
8 human 130540 FLACC1 flagellum associated contai... XM_011510610.3 71.5% 35.5% 0_1ins309;463_464insAA;632_700del
9 human 130540 FLACC1 flagellum associated contai... XM_011510612.3 47.7% 11.6% 0_1ins627;145_146insAA;314_382del
10 human 130540 FLACC1 flagellum associated contai... XM_017003362.2 47.7% 11.6% 0_1ins627;145_146insAA;314_382del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
852
ORF length:
786
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA CCCCAACCCT CTCATCTACT GCACCTGCTG GGACCCCTGG AACTTGGGAC
121CACGGAAGCT AATCAAGACC CCTCAACTAC CACGCAAGAA CTCCACAGGG AGTTCCAAGC
181TAACTCCTCT TCTACCAGCT CCAAAAAATC ACAATTACCT CCAACCAACA AAACCTGTTG
241TTTCCCCAAA AATGAAAATC CATTCAGCAA GGCAAGAAGA GACTAATAAA TCATTTTATG
301AAGTGATCAA CGTGTCACCT GGCTATCAAC TTGTTCGGAA TCGGGAACAG ATTTCTGTCA
361CCTTAGGGGA TGAGATGTTT GATAGGAAAA AGCGGTGGGA ATCGGAGATC CCGGACAAAG
421GCAGATTTTC CAGGACCAAC ATCATTTCTG ACCTAGAAGA GCAAATCTCA GAGCTGACAG
481CAATAATTGA ACAAATGAAC AGAGACCACC AGTCTGCCCA GAAATTGCTC TCCAGTGAAA
541TGGATCTCCG CTGTGCTGAG ATGAAACAGA ACTTTGAAAA CAAGAACAGG GAGCTCAAAG
601AGGCCCATGA AGCAGAACTC AGTGAGTTGG AGAACAACTA CAAAGCAGCC TTGAAGGCAG
661AGAAGTTGGC TGCCCAAGAG AAGCTAGAGG AGATGGGAAA AGAATACAAG TATTTGAAGA
721ATATGTTTCG TACGTATCAG GACAGTATTT ATGATGAAAT GGAAGAGAAG TGGTCAAAAC
781AGAAGGCGAA ATGGAAGAAG GATGAGAAGT TCGAGCGAGA AAATATCCTG CTACAGCAAA
841AAAAAAAAAG ATGACCAAAA AATTCGAAAT GGAGTCAGGA GAAGAAGATA AGAAAATAAA
901TGAATCCTGC AGTGCTGTCT TTGAGAACTT CATTCAAGAG AAGGAGGAGC TCTTGAAACA
961ACATCAAAGT GACACCTTGC AATTAGAAGA GCTGAGAAAA ACCAAAGAGG TCATGCAGGA
1021AGAATTGCAT GCACAAGCCC TTATCCTAGA GTCACTGAAC ACAAACCTCT ACTATACCCA
1081GTTGGAACTC CAGAAAGAGA AAGCTATAGT GGGAAATCTG GAGAAAATGC TTCAAACCAA
1141GTTTGCTGAA ACTGAAGAAA AGTATAAGCA CACCATACAG ATCCTGACGG AAGAGAACAT
1201TCATCTGAAG CAAAAGATAA TTTCTAAGAA TGAAGAAATT TGTGAAGGAT GTTCTGGGAG
1261ATTGGCCTCT ATTACTGTTT CTAAGGATGA TTCTGACACT GTGCAAGATG GTAGCAAGAA
1321AGGACAAGAA TCATACCCAA CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt
1381atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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