Construct: ORF ccsbBroadEn_14408

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013063.1_s300c1, BRDN0000391034
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RUNDC3B (154661)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 154661 RUNDC3B RUN domain containing 3B NM_001134406.2 94.6% 92.6% (many diffs)
2 human 154661 RUNDC3B RUN domain containing 3B XM_011515827.1 90.8% 88.9% (many diffs)
3 human 154661 RUNDC3B RUN domain containing 3B XM_005250156.2 84.8% 83% (many diffs)
4 human 154661 RUNDC3B RUN domain containing 3B NM_001134405.2 84.5% 82.6% (many diffs)
5 human 154661 RUNDC3B RUN domain containing 3B XM_011515826.1 81.8% 80% (many diffs)
6 human 154661 RUNDC3B RUN domain containing 3B NM_138290.3 81.4% 79.7% (many diffs)
7 human 154661 RUNDC3B RUN domain containing 3B XM_017011765.2 66.7% 64.8% (many diffs)
8 human 154661 RUNDC3B RUN domain containing 3B XM_017011766.2 66.7% 64.8% (many diffs)
9 human 154661 RUNDC3B RUN domain containing 3B XM_024446669.1 65.1% 62.4% (many diffs)
10 human 154661 RUNDC3B RUN domain containing 3B XM_011515828.2 59.5% 57.8% (many diffs)
11 human 154661 RUNDC3B RUN domain containing 3B XM_011515829.2 59.5% 57.8% (many diffs)
12 human 154661 RUNDC3B RUN domain containing 3B XM_017011761.2 59.5% 57.8% (many diffs)
13 human 154661 RUNDC3B RUN domain containing 3B XM_017011762.1 59.5% 57.8% (many diffs)
14 human 154661 RUNDC3B RUN domain containing 3B XM_017011763.2 59.5% 57.8% (many diffs)
15 human 154661 RUNDC3B RUN domain containing 3B XM_017011764.1 58.3% 55.9% (many diffs)
16 human 154661 RUNDC3B RUN domain containing 3B XM_005250158.2 58.1% 55.7% (many diffs)
17 mouse 242819 Rundc3b RUN domain containing 3B NM_198620.1 84.7% 87.7% (many diffs)
18 mouse 242819 Rundc3b RUN domain containing 3B XM_006503578.2 76% 78.6% (many diffs)
19 mouse 242819 Rundc3b RUN domain containing 3B NM_001347311.1 75.7% 78.3% (many diffs)
20 mouse 242819 Rundc3b RUN domain containing 3B XM_006503579.3 74% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTCCCGGAGC CTGGGGGGCC TGAGCGGGAT CCGCGGCGGT GGCGGCGGAG
121GCGGCAAGAA AAGCCTGAGC GCCCGCAATG CTGCGGTGGA GAGGAGGAAC CTGATCACCG
181TGTGCAGGTT TTCTGTGAAG ACCATGATTG ATCGGTCTTG CTTTGAGACA ATTGATGATT
241CTTCTCCTGA ATTTAACAAT TTTGCAGCTA TTTTGGAACA GATTTTAAGC CACCGGCTAA
301AAGGTCAAGT AACCTGGTTT GGTTATGAAA GTCCTCGTAG CTTCTGGGAC TATATCAGAG
361TGGCTTGCCG GAAAGTTTCA CAGAATTGTA TCTGCAGCAT TGAAAATATG GAAAATGTCA
421GTTCTTCTAG AGCTAAGGGT AGAGCCTGGA TCAGAGTAGC ACTCATGGAA AAACATTTAT
481CTGAATACAT CTCTACAGCT CTGAGAGACT TCAAAACAAC CAGGAGATTT TATGAAGATG
541GAGCAATTGT CTTGGGTGAA GAAGCAAATA TGCTTGCTGG CATGCTTCTA GGACTCAATG
601CTATTGATTT CAGTTTCTGC CTAAAGGGAG GGGGGCTGGA TGGCAGTTTT CCTGCTGTAA
661TAGACTATAC ACCATATTTG AAGTATATCC AAAGTTCTGA TAGTATCAGT AGTGATGAGG
721AGGAGCTAAG GACTTTGGGA AGCAGTGGTA GCGAAAGCAG TACTCCAGAG AATGTCGGAC
781CTCCTTTCCT CATGGATGAG AACAGTTGGT TCAACAAGTG TAAGAGAGTT AAACAAAAGT
841ATCAGCTTAC CCTGGAACAG AAGGGTTACC TTGAAGAACT CTTACGACTT CGAGAGAACC
901AACTATCTGA ATCTGTCTCC CAGAATAAAA TACTACTTCA AAGGATTGAA GATTCCGATC
961TGGCTCATAA ACTGGAGAAG GAACAATTAG AATATATAAT TGTGGAGCTT CAAGATCAGC
1021TGAAAAGTTA TCAAAGTCTT GACCAGTTAT CAGCAGAAGT TAGCCTTTCT CAGACTTCAC
1081TAGATCCAGG CCAGTCACAA GAAGGAGATG GAAAACAAGA CACATTAAAT GTAATGAGTG
1141AAGGTAAGGA AGATACTCCC TCATTACTTG GCCTCTGTGG ATCTCCAACG TCAGTCAAGT
1201TAAAAGTCTC TAACAAGCTT AAAATCTACC CAACTTTCTT GTACAAAGTt ggcattataa
1261gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)