Construct: ORF ccsbBroadEn_14432

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004946.1_s300c1, BRDN0000396312
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKS6 (203286)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 203286 ANKS6 ankyrin repeat and sterile ... XM_024447445.1 28.8% 24.3% (many diffs)
2 human 203286 ANKS6 ankyrin repeat and sterile ... XM_006716999.3 26.2% 20.6% (many diffs)
3 human 203286 ANKS6 ankyrin repeat and sterile ... NM_173551.5 25.3% 19.8% (many diffs)
4 human 203286 ANKS6 ankyrin repeat and sterile ... XM_017014445.1 25.3% 19.8% (many diffs)
5 human 203286 ANKS6 ankyrin repeat and sterile ... XM_006716998.3 25.3% 19.8% (many diffs)
6 human 203286 ANKS6 ankyrin repeat and sterile ... XM_005251794.4 25% 19.5% (many diffs)
7 human 203286 ANKS6 ankyrin repeat and sterile ... XM_005251793.4 24.9% 19.5% (many diffs)
8 human 203286 ANKS6 ankyrin repeat and sterile ... XR_428520.3 19.3% (many diffs)
9 human 203286 ANKS6 ankyrin repeat and sterile ... XR_242576.3 17.8% (many diffs)
10 human 203286 ANKS6 ankyrin repeat and sterile ... XR_929736.2 17.8% (many diffs)
11 human 203286 ANKS6 ankyrin repeat and sterile ... XM_024447447.1 16.1% 12.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
789
ORF length:
723
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC AATTAGGGAT GACATAAGCT GGCCCCCGAG TGCTGTGTGT TCAGTGTCAC
121TAATTCTCCA TCTTCCTGGC AGATTTGGGC ATGTGAGTGT GGCACACCTC CTGTTGGATC
181ACGGGGCTGA TGTCAATGCC CAGAACCGGC TGGGGGCCAG TGTGCTCACT GTGGCTTCTC
241GGGGCGGCCA CCTGGGTGTG GTGAAGCTGC TCCTGGAAGC CGGTGCCTTT GTGGACCATC
301ACCACCCTTC AGGCGAGCAA CTGGGGTTGG GCGGCAGCAG GGATGAGCCC TTGGACATCA
361CAGCCCTGAT GGCTGCCATC CAGCACGGGC ACGAGGCCGT GGTGCGTCTA CTGATGGAGT
421GGGGCGCGGA CCCCAACCAC GCAGCCCGGA CCGTGGGCTG GAGCCCGCTG ATGCTGGCCG
481CACTCACTGG GCGGCTTGGA GTGGCCCAGC AGCTGGTGGA GAAGGGCGCC AACCCTGACC
541ACCTCAGCGT GCTGGAGAAG ACCGCCTTCG AGGTTGCACT GGACTGCAAG CACAGGGACC
601TTGTAGACTA CCTGGACCCG CTGACCACCG TCAGGCCCAA AACAGGTCAG GCTGCATGCC
661CCCCGTGGCT TCACAGAGGA CCCCAAATTG TGTTTATGTG GCTTAAGCTG AGGATTGCTC
721TACTGGAAGG ACACGCAGAA CTCAGAGTCC AGCCCTGCAG ACCACTGAGA CTGAGGAATT
781GGTGTCTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat
841ttgttgcaac gaac

Download FASTA (ORF) (Full)