Construct: ORF ccsbBroadEn_14477
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007004.1_s300c1, BRDN0000388810
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIML1 (339976)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339976 | TRIML1 | tripartite motif family like 1 | XM_011531919.2 | 51.6% | 51.4% | 1_537del;549G>T |
| 2 | human | 339976 | TRIML1 | tripartite motif family like 1 | XM_024454028.1 | 51.6% | 51.4% | 1_537del;549G>T |
| 3 | human | 339976 | TRIML1 | tripartite motif family like 1 | NM_178556.5 | 40.9% | 40.8% | 1_828del;840G>T |
| 4 | human | 339976 | TRIML1 | tripartite motif family like 1 | XR_001741216.1 | 34.7% | 1_968del;980G>T;1545_1655del | |
| 5 | human | 339976 | TRIML1 | tripartite motif family like 1 | XM_006714207.3 | 30.6% | 30.5% | 1_828del;840G>T;993_994ins144 |
| 6 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_011242222.1 | 51.4% | 55.2% | (many diffs) |
| 7 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312804.1 | 47.2% | 50.4% | (many diffs) |
| 8 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312805.1 | 47.2% | 50.4% | (many diffs) |
| 9 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312806.1 | 47.2% | 50.4% | (many diffs) |
| 10 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312808.1 | 47.2% | 50.4% | (many diffs) |
| 11 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312809.1 | 47.2% | 50.4% | (many diffs) |
| 12 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312810.1 | 47.2% | 50.4% | (many diffs) |
| 13 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312803.1 | 36.9% | 39.4% | (many diffs) |
| 14 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | NM_177742.4 | 32.9% | 35.4% | (many diffs) |
| 15 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_006509422.3 | 32.9% | 35.3% | (many diffs) |
| 16 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312802.1 | 32.7% | 35.1% | (many diffs) |
| 17 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_011242219.2 | 31.2% | 33.4% | (many diffs) |
| 18 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312801.1 | 31.2% | 33.4% | (many diffs) |
| 19 | mouse | 244448 | Triml1 | tripartite motif family-like 1 | XM_017312800.1 | 31.2% | 33.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 642
- ORF length:
- 576
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGAGATTCTA AGAAAATTCA GCACGGAGAT AACGCTGGAC CCAGCCACAG 121 CTAATGCCTA TCTCGTGTTG TCGGAGGATC TGAAGAGTGT GAAATATGGG GGAAGCAGAC 181 AGCAGCTACC CGACAACCCG GAAAGATTTG ACCAGTCTGC GACTGTGCTG GGTACTCAGA 241 TCTTCACCAG TGGGAGACAC TACTGGGAGG TGGAGGTGGG AAACAAGACC GAGTGGGAAG 301 TGGGCATCTG CAAGGACTCT GTGAGCAGAA AGGGGAATCT CCCCAAGCCA CCTGGGGACC 361 TGTTCTCACT AATAGGTTTA AAAATCGGAG ATGATTACAG CCTCTGGGTC TCGTCACCTT 421 TGAAAGGTCA GCACGTCAGA GAGCCTGTGT GTAAGGTTGG TGTCTTCCTG GACTATGAAT 481 CTGGACATAT AGCATTCTAC AACGGGACGG ATGAATCCCT CATCTACAGC TTCCCGCAGG 541 CTTCTTTCCA AGAGGCCCTC AGGCCTATCT TTTCCCCCTG CCTCCCAAAT GAGGGGACAA 601 ACACAGACCC TCTCACCATC TGCTCACTGA ACAGCCACGT CTGCCCAACT TTCTTGTACA 661 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac